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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
188.8
nTPM
HPA Brain:
296.1
nTPM
GTEx:
188.8
nTPM
FANTOM5:
920.0
Scaled Tags Per Million
Pig:
226.4
nTPM
Mouse:
323.0
nTPM
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA038356
Antibody HPA073145
Glial cells
Low
High
Neuronal cells
Low
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM
296.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 288.3
2529
Female, age 94, left hemisphere
300.2
1898
Male, age 80, left hemisphere
299.1
1911
Female, age 85, right hemisphere
289.6
2621
Female, age 67, right hemisphere
289.3
1855
Male, age 76, left hemisphere
282.1
2148
Female, age 91, left hemisphere
269.7
Dentate gyrus nTPM: 276.5
2010
Male, age 76, both hemispheres
307.5
2530
Female, age 94, left hemisphere
301.8
2528
Male, age 74, both hemispheres
283.3
2246
Female, age 85, both hemispheres
269.8
1927
Female, age 91, both hemispheres
259.4
2531
Female, age 67, both hemispheres
237.3
Entorhinal gyrus nTPM: 283.8
2117
Female, age 91, right hemisphere
315.0
1787
Male, age 76, left hemisphere
291.0
2764
Male, age 80, right hemisphere
285.4
1938
Female, age 85, left hemisphere
284.4
2686
Male, age 75, right hemisphere
265.6
2613
Female, age 94, left hemisphere
261.6
Hippocampus, CA1 nTPM: 281.1
2527
Male, age 74, both hemispheres
288.5
1873
Female, age 85, both hemispheres
286.1
2045
Male, age 76, both hemispheres
280.5
2082
Female, age 91, right hemisphere
276.5
2749
Male, age 80, left hemisphere
274.1
Hippocampus, CA2 nTPM: 280.6
2249
Male, age 74, both hemispheres
309.4
1892
Male, age 76, both hemispheres
292.5
1940
Female, age 85, left hemisphere
288.8
2113
Female, age 91, right hemisphere
276.4
1963
Male, age 80, left hemisphere
261.3
2437
Female, age 94, left hemisphere
255.0
Hippocampus, CA3 nTPM: 278.3
1867
Male, age 76, both hemispheres
309.9
2436
Male, age 74, both hemispheres
307.0
1891
Female, age 85, both hemispheres
292.3
2620
Female, age 94, left hemisphere
264.4
2137
Male, age 80, left hemisphere
257.0
2861
Female, age 67, both hemispheres
239.1
Parahippocampal cortex nTPM: 291.2
2018
Male, age 76, both hemispheres
316.5
1850
Male, age 80, both hemispheres
311.6
2250
Female, age 67, right hemisphere
310.0
2245
Female, age 91, both hemispheres
306.0
2622
Female, age 67, right hemisphere
287.7
2532
Female, age 72, left hemisphere
282.5
1933
Female, age 85, both hemispheres
280.0
1990
Female, age 91, right hemisphere
279.8
2692
Male, age 74, both hemispheres
279.3
2693
Female, age 94, both hemispheres
258.7
Perirhinal gyrus nTPM: 296.1
1841
Female, age 85, right hemisphere
313.3
1794
Male, age 80, right hemisphere
310.7
1847
Female, age 91, left hemisphere
303.6
2848
Male, age 76, right hemisphere
278.2
2521
Female, age 94, right hemisphere
274.6
Subiculum nTPM: 292.5
2619
Male, age 74, both hemispheres
338.9
2042
Male, age 76, both hemispheres
314.5
1977
Female, age 85, both hemispheres
285.7
1901
Male, age 80, both hemispheres
282.0
2729
Female, age 91, right hemisphere
275.0
2438
Female, age 94, left hemisphere
258.8
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
188.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 188.8
Samples: 197
Max nTPM: 386.8
Min nTPM: 133.6
Std nTPM: 29.0
Median nTPM: 184.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
386.8
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
287.4
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
255.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
249.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
247.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
240.7
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
240.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
238.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
236.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
236.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
232.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
232.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
231.5
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
228.5
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
227.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
225.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
225.0
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
224.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
223.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
221.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
221.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
220.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
218.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
218.0
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
217.2
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
216.9
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
216.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
216.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
216.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
215.4
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
215.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
214.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
213.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
212.8
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
211.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
210.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
210.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
210.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
210.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
210.1
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
209.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
207.9
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
207.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
206.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
205.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
205.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
205.2
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
205.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
205.0
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
204.4
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
203.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
203.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
202.6
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
202.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
201.8
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
201.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
201.3
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
201.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
200.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
200.5
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
200.1
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
198.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
198.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
198.2
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
197.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
197.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
197.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
197.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
196.3
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
196.3
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
195.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
195.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
195.7
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
195.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
195.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
195.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
195.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
195.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
194.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
194.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
194.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
194.0
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
193.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
193.0
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
192.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
191.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
190.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
188.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
187.7
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
187.3
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
187.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
187.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
187.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
186.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
185.8
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
184.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
184.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
184.3
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
184.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
183.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
183.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
183.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
183.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
183.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
182.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
182.5
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
182.4
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
182.2
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
181.4
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
181.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
181.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
181.3
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
181.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
181.2
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
180.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
180.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
180.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
179.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
179.3
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
178.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
178.6
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
178.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
177.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
177.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
177.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
177.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
176.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
176.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
175.5
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
175.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
175.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
175.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
175.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
175.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
175.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
173.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
173.4
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
173.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
173.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
172.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
172.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
172.2
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
172.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
171.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
170.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
169.1
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
167.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
167.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
167.8
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
167.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
167.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
167.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
167.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
166.9
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
166.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
166.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
166.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
166.0
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
165.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
165.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
164.8
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
164.3
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
163.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
163.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
162.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
161.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
160.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
160.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
160.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
160.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
159.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
159.4
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
158.6
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
157.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
157.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
157.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
156.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
156.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
156.2
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
155.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
155.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
154.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
152.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
150.9
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
150.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
150.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
150.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
149.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
148.9
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
148.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
148.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
148.1
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
145.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
144.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
142.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
141.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
133.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.