MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:526.4 nTPM
HPA Brain:104.5 nTPM
GTEx:526.4 nTPM
FANTOM5:17.0 Scaled Tags Per Million
Pig:1900.0 nTPM
Mouse:146.6 nTPM
Allen mouse:8.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 104.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.6
2219 Male, age 76, both hemispheres 135.1
2666 Male, age 74, left hemisphere 96.9
1870 Female, age 42, unknown 76.4
2586 Male, age 75, left hemisphere 66.7
1833 Male, age 53, unknown 60.2
2828 Female, age 72, unknown 54.3
1827 Male, age 72, unknown 52.1
1830 Male, age 51, unknown 50.4
2411 Female, age 72, unknown 50.1
2019 Male, age 18, unknown 43.5
Dorsal raphe nucleus
nTPM: 54.7
1828 Male, age 53, unknown 64.4
2750 Male, age 76, both hemispheres 57.3
2298 Female, age 72, unknown 54.3
2047 Male, age 72, unknown 51.8
2016 Female, age 72, unknown 45.8
Inferior colliculus
nTPM: 66.2
2849 Male, age 72, unknown 95.5
1890 Male, age 53, unknown 76.1
1848 Female, age 42, unknown 49.3
2097 Female, age 72, unknown 43.9
Median raphe nucleus
nTPM: 104.5
2220 Male, age 76, midline 104.5
Periaquaductal grey, anterior
nTPM: 54.0
2502 Female, age 75, unknown 54.9
1795 Male, age 51, unknown 53.5
1947 Male, age 18, unknown 53.5
Periaquaductal grey, dorsal
nTPM: 69.7
2850 Male, age 76, both hemispheres 106.4
1840 Male, age 53, unknown 60.7
1831 Male, age 72, unknown 56.2
2464 Female, age 72, unknown 55.3
Periaquaductal grey, lateral
nTPM: 42.0
2053 Male, age 18, unknown 49.1
2140 Male, age 76, both hemispheres 43.7
2272 Male, age 74, both hemispheres 33.1
Pretectal area
nTPM: 57.3
2667 Female, age 75, unknown 84.7
1816 Male, age 51, unknown 69.0
1944 Female, age 72, unknown 61.7
1815 Male, age 53, unknown 60.5
1817 Female, age 42, unknown 59.5
2224 Female, age 72, unknown 58.6
2825 Male, age 18, unknown 58.4
2007 Male, age 72, unknown 57.4
2407 Male, age 75, both hemispheres 52.5
2316 Male, age 76, right hemisphere 35.6
2273 Male, age 74, both hemispheres 32.1
Red nucleus
nTPM: 68.2
2503 Female, age 72, unknown 97.2
1865 Male, age 51, unknown 77.2
2725 Female, age 75, unknown 77.1
1904 Male, age 53, unknown 73.6
2584 Male, age 75, left hemisphere 67.5
1954 Female, age 42, unknown 67.1
1821 Female, age 72, unknown 65.9
2769 Male, age 72, unknown 61.4
2823 Male, age 76, right hemisphere 60.9
2227 Male, age 72, unknown 60.1
2785 Male, age 18, unknown 58.1
2588 Male, age 74, left hemisphere 52.4
Substantia nigra
nTPM: 77.9
2699 Male, age 18, unknown 135.4
2665 Male, age 74, both hemispheres 100.3
2241 Male, age 72, unknown 89.6
1916 Female, age 42, unknown 87.2
1851 Male, age 51, unknown 76.0
2409 Female, age 72, unknown 66.2
1941 Male, age 53, unknown 64.6
1889 Female, age 72, unknown 60.6
2583 Male, age 75, right hemisphere 55.5
2590 Female, age 75, unknown 43.5
Superior colliculus
nTPM: 59.0
2587 Male, age 74, left hemisphere 69.0
2664 Male, age 75, both hemispheres 66.4
1796 Male, age 53, unknown 66.1
1913 Female, age 42, unknown 65.1
1895 Male, age 76, right hemisphere 60.9
1995 Male, age 72, unknown 58.7
2668 Female, age 75, unknown 56.1
1839 Male, age 51, unknown 52.6
2087 Female, age 72, unknown 50.8
2261 Male, age 18, unknown 44.5
Ventral tegmental area
nTPM: 70.2
2218 Male, age 76, both hemispheres 97.6
1915 Female, age 42, unknown 86.8
2223 Female, age 72, unknown 76.6
1942 Male, age 51, unknown 66.4
2021 Male, age 53, unknown 47.7
2410 Female, age 72, unknown 46.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 526.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 526.4
Samples: 139

Max nTPM: 1649.7
Min nTPM: 152.1
Std nTPM: 292.2
Median nTPM: 477.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1649.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1646.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1400.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 1289.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1135.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1117.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 1107.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 1094.6
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 1085.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1074.4
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 932.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.0
FF:10158-103A5 76 years, female 17.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 1900.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1900.1
Samples: 4

Max nTPM: 2571.1
Min nTPM: 1452.8
Sample A Female 2571.1
Sample B Female 1934.2
Sample C Male 1642.1
Sample D Male 1452.8
Midbrain
nTPM: 1733.3
Samples: 4

Max nTPM: 2262.7
Min nTPM: 1306.4
Sample A Female 2262.7
Sample B Female 2000.3
Sample C Male 1363.9
Sample D Male 1306.4
Periaqueductal gray
nTPM: 1413.1
Samples: 3

Max nTPM: 1453.4
Min nTPM: 1354.7
Sample B Female 1431.1
Sample C Male 1453.4
Sample D Male 1354.7
Superior colliculi
nTPM: 1866.0
Samples: 4

Max nTPM: 2227.1
Min nTPM: 1645.4
Sample A Female 2227.1
Sample B Female 1869.4
Sample C Male 1722.0
Sample D Male 1645.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 146.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 146.6
Samples: 4

Max nTPM: 176.4
Min nTPM: 123.0
Sample A Male 176.4
Sample B Male 141.0
Sample C Female 123.0
Sample D Female 146.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.5
68191282 Antisense, RP_041123_02_C06, Mouse strain C57BL/6J (56 days, male) 8.5

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