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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4466.8
nTPM
Monaco:
588.9
nTPM
Schmiedel:
469.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
4466.8
HPA sample
nTPM
Memory B-cell nTPM: 4466.8
Samples: 6
Max nTPM: 5116.8
Min nTPM: 3741.8
P10809_1017
4180.4
P10809_1025
4687.0
P10809_1044
3741.8
P10809_1063
4686.8
P10809_1092
4388.0
P10809_1105
5116.8
Naive B-cell nTPM: 4277.6
Samples: 6
Max nTPM: 5289.1
Min nTPM: 3051.4
P10809_1011
3886.8
P10809_1029
4325.4
P10809_1048
3051.4
P10809_1067
4835.1
P10809_1091
4277.6
P10809_1104
5289.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
588.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 556.5
Samples: 4
Max nTPM: 891.9
Min nTPM: 163.9
RHH5310_R3677
347.1
RHH5218_R3590
163.9
RHH5247_R3619
823.2
RHH5276_R3648
891.9
Naive B-cell nTPM: 588.9
Samples: 4
Max nTPM: 1344.1
Min nTPM: 174.8
RHH5308_R3675
363.9
RHH5216_R3588
174.8
RHH5245_R3617
1344.1
RHH5274_R3646
472.9
Non-switched memory B-cell nTPM: 383.6
Samples: 4
Max nTPM: 867.5
Min nTPM: 118.7
RHH5309_R3676
349.1
RHH5217_R3589
199.1
RHH5246_R3618
118.7
RHH5275_R3647
867.5
Plasmablast nTPM: 458.7
Samples: 4
Max nTPM: 637.0
Min nTPM: 266.3
RHH5312_R3679
471.1
RHH5220_R3592
266.3
RHH5249_R3621
460.3
RHH5278_R3650
637.0
Switched memory B-cell nTPM: 371.0
Samples: 4
Max nTPM: 643.8
Min nTPM: 267.5
RHH5311_R3678
267.5
RHH5219_R3591
301.3
RHH5248_R3620
271.2
RHH5277_R3649
643.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
