MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:203.7 nTPM
HPA Brain:82.6 nTPM
GTEx:203.7 nTPM
FANTOM5:60.9 Scaled Tags Per Million
Pig:57.3 nTPM
Mouse:44.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 82.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.1
2586 Male, age 75, left hemisphere 108.2
2828 Female, age 72, unknown 86.6
2411 Female, age 72, unknown 81.9
2019 Male, age 18, unknown 78.9
1870 Female, age 42, unknown 75.3
1833 Male, age 53, unknown 69.5
1830 Male, age 51, unknown 69.4
1827 Male, age 72, unknown 63.6
2666 Male, age 74, left hemisphere 59.3
2219 Male, age 76, both hemispheres 58.2
Dorsal raphe nucleus
nTPM: 71.5
2750 Male, age 76, both hemispheres 81.8
2047 Male, age 72, unknown 72.6
2298 Female, age 72, unknown 71.5
1828 Male, age 53, unknown 66.3
2016 Female, age 72, unknown 65.2
Inferior colliculus
nTPM: 57.7
1890 Male, age 53, unknown 63.5
2097 Female, age 72, unknown 63.3
1848 Female, age 42, unknown 55.8
2849 Male, age 72, unknown 48.3
Median raphe nucleus
nTPM: 64.8
2220 Male, age 76, midline 64.8
Periaquaductal grey, anterior
nTPM: 70.1
2502 Female, age 75, unknown 78.3
1795 Male, age 51, unknown 67.0
1947 Male, age 18, unknown 65.0
Periaquaductal grey, dorsal
nTPM: 52.5
2464 Female, age 72, unknown 61.9
1840 Male, age 53, unknown 55.0
1831 Male, age 72, unknown 46.8
2850 Male, age 76, both hemispheres 46.4
Periaquaductal grey, lateral
nTPM: 52.5
2053 Male, age 18, unknown 59.4
2272 Male, age 74, both hemispheres 49.2
2140 Male, age 76, both hemispheres 49.0
Pretectal area
nTPM: 62.1
2007 Male, age 72, unknown 80.5
1817 Female, age 42, unknown 67.6
1816 Male, age 51, unknown 65.5
2316 Male, age 76, right hemisphere 64.4
1815 Male, age 53, unknown 64.3
2667 Female, age 75, unknown 62.5
1944 Female, age 72, unknown 61.8
2825 Male, age 18, unknown 58.8
2224 Female, age 72, unknown 55.9
2273 Male, age 74, both hemispheres 51.5
2407 Male, age 75, both hemispheres 50.5
Red nucleus
nTPM: 82.6
2503 Female, age 72, unknown 94.1
2769 Male, age 72, unknown 94.1
2227 Male, age 72, unknown 89.0
2588 Male, age 74, left hemisphere 88.0
1904 Male, age 53, unknown 85.3
2785 Male, age 18, unknown 84.2
1865 Male, age 51, unknown 82.3
1954 Female, age 42, unknown 82.2
1821 Female, age 72, unknown 79.1
2584 Male, age 75, left hemisphere 74.3
2823 Male, age 76, right hemisphere 72.6
2725 Female, age 75, unknown 65.9
Substantia nigra
nTPM: 73.3
1916 Female, age 42, unknown 92.1
1851 Male, age 51, unknown 88.0
2583 Male, age 75, right hemisphere 84.4
2409 Female, age 72, unknown 74.2
2699 Male, age 18, unknown 68.7
2665 Male, age 74, both hemispheres 67.2
1889 Female, age 72, unknown 66.2
1941 Male, age 53, unknown 64.9
2590 Female, age 75, unknown 64.3
2241 Male, age 72, unknown 62.6
Superior colliculus
nTPM: 65.7
2668 Female, age 75, unknown 80.7
1995 Male, age 72, unknown 70.4
1796 Male, age 53, unknown 69.8
1913 Female, age 42, unknown 69.2
2664 Male, age 75, both hemispheres 69.1
2587 Male, age 74, left hemisphere 65.2
2087 Female, age 72, unknown 62.8
2261 Male, age 18, unknown 62.5
1839 Male, age 51, unknown 55.8
1895 Male, age 76, right hemisphere 51.7
Ventral tegmental area
nTPM: 76.7
2410 Female, age 72, unknown 80.6
2223 Female, age 72, unknown 80.3
1915 Female, age 42, unknown 79.3
1942 Male, age 51, unknown 77.0
2021 Male, age 53, unknown 72.4
2218 Male, age 76, both hemispheres 70.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 203.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 203.7
Samples: 139

Max nTPM: 585.7
Min nTPM: 65.8
Std nTPM: 75.9
Median nTPM: 189.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 585.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 504.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 424.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 388.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 376.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 371.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 354.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 338.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 329.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 316.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 312.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.9
FF:10158-103A5 76 years, female 60.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 57.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 51.2
Samples: 4

Max nTPM: 74.3
Min nTPM: 38.9
Sample A Female 74.3
Sample B Female 48.0
Sample C Male 38.9
Sample D Male 43.7
Midbrain
nTPM: 57.4
Samples: 4

Max nTPM: 85.3
Min nTPM: 38.5
Sample A Female 85.3
Sample B Female 59.6
Sample C Male 46.0
Sample D Male 38.5
Periaqueductal gray
nTPM: 44.9
Samples: 3

Max nTPM: 54.1
Min nTPM: 37.4
Sample B Female 54.1
Sample C Male 43.1
Sample D Male 37.4
Superior colliculi
nTPM: 50.3
Samples: 4

Max nTPM: 71.5
Min nTPM: 39.4
Sample A Female 71.5
Sample B Female 39.4
Sample C Male 44.8
Sample D Male 45.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 44.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.1
Samples: 4

Max nTPM: 48.6
Min nTPM: 39.9
Sample A Male 48.6
Sample B Male 39.9
Sample C Female 40.2
Sample D Female 47.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71492790 Antisense, RP_050913_01_E09, Mouse strain C57BL/6J (56 days, male) 0.1

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