HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:66.2 nTPM
HPA Brain:114.7 nTPM
GTEx:66.2 nTPM
FANTOM5:51.1 Scaled Tags Per Million
Pig:5.4 nTPM
Mouse:4.6 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA048046
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 114.7
Sample id Sample description nTPM
Hippocampus
nTPM: 83.9
2529 Female, age 94, left hemisphere 128.0
1911 Female, age 85, right hemisphere 115.3
2148 Female, age 91, left hemisphere 72.0
1898 Male, age 80, left hemisphere 65.8
2621 Female, age 67, right hemisphere 64.5
1855 Male, age 76, left hemisphere 57.8
Dentate gyrus
nTPM: 89.5
2530 Female, age 94, left hemisphere 122.2
2528 Male, age 74, both hemispheres 121.7
2246 Female, age 85, both hemispheres 88.3
2010 Male, age 76, both hemispheres 87.2
2531 Female, age 67, both hemispheres 62.5
1927 Female, age 91, both hemispheres 55.0
Entorhinal gyrus
nTPM: 84.3
2117 Female, age 91, right hemisphere 123.6
2764 Male, age 80, right hemisphere 116.7
2686 Male, age 75, right hemisphere 73.1
2613 Female, age 94, left hemisphere 68.0
1787 Male, age 76, left hemisphere 64.0
1938 Female, age 85, left hemisphere 60.6
Hippocampus, CA1
nTPM: 68.1
2082 Female, age 91, right hemisphere 91.5
2527 Male, age 74, both hemispheres 88.9
1873 Female, age 85, both hemispheres 84.9
2749 Male, age 80, left hemisphere 47.3
2045 Male, age 76, both hemispheres 27.7
Hippocampus, CA2
nTPM: 85.3
2437 Female, age 94, left hemisphere 100.1
2249 Male, age 74, both hemispheres 99.7
2113 Female, age 91, right hemisphere 95.1
1940 Female, age 85, left hemisphere 90.3
1963 Male, age 80, left hemisphere 89.5
1892 Male, age 76, both hemispheres 37.1
Hippocampus, CA3
nTPM: 65.6
1891 Female, age 85, both hemispheres 133.1
2436 Male, age 74, both hemispheres 61.5
1867 Male, age 76, both hemispheres 56.7
2620 Female, age 94, left hemisphere 55.9
2137 Male, age 80, left hemisphere 44.5
2861 Female, age 67, both hemispheres 42.3
Parahippocampal cortex
nTPM: 68.1
2692 Male, age 74, both hemispheres 114.4
1990 Female, age 91, right hemisphere 89.1
2532 Female, age 72, left hemisphere 87.4
2018 Male, age 76, both hemispheres 70.3
2245 Female, age 91, both hemispheres 65.2
1850 Male, age 80, both hemispheres 63.6
1933 Female, age 85, both hemispheres 57.7
2693 Female, age 94, both hemispheres 48.6
2622 Female, age 67, right hemisphere 45.8
2250 Female, age 67, right hemisphere 39.3
Perirhinal gyrus
nTPM: 42.6
1794 Male, age 80, right hemisphere 50.5
2521 Female, age 94, right hemisphere 48.4
2848 Male, age 76, right hemisphere 45.1
1847 Female, age 91, left hemisphere 40.2
1841 Female, age 85, right hemisphere 28.8
Subiculum
nTPM: 114.7
2042 Male, age 76, both hemispheres 157.9
1901 Male, age 80, both hemispheres 118.6
2619 Male, age 74, both hemispheres 115.1
2438 Female, age 94, left hemisphere 108.6
2729 Female, age 91, right hemisphere 95.2
1977 Female, age 85, both hemispheres 93.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 66.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 66.2
Samples: 197

Max nTPM: 272.2
Min nTPM: 5.1
Std nTPM: 39.9
Median nTPM: 58.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 272.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 192.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 179.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 173.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 168.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 166.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 165.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 160.0
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 154.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 148.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 145.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 51.1
FF:10153-102I9 76 years, female 80.4
FF:10169-103B7 60 years, female 21.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 5.4
Pig sample Sample description nTPM
Subiculum
nTPM: 4.1
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.5
Sample A Female 5.3
Sample B Female 3.5
Sample C Male 3.5
Sample D Male 3.9
Dorsal hippocampus
nTPM: 5.1
Samples: 4

Max nTPM: 8.4
Min nTPM: 1.9
Sample A Female 8.4
Sample B Female 3.4
Sample C Male 6.7
Sample D Male 1.9
Entorhinal cortex
nTPM: 3.7
Samples: 4

Max nTPM: 5.9
Min nTPM: 2.7
Sample A Female 5.9
Sample B Female 2.7
Sample C Male 3.3
Sample D Male 2.7
Ventral hippocampus
nTPM: 5.4
Samples: 4

Max nTPM: 6.8
Min nTPM: 2.8
Sample A Female 6.6
Sample B Female 2.8
Sample C Male 6.8
Sample D Male 5.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 4.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 3.0
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.0
Sample A Male 3.9
Sample B Male 3.2
Sample C Female 2.8
Sample D Female 2.0
Hippocampal formation
nTPM: 4.7
Samples: 4

Max nTPM: 6.0
Min nTPM: 3.1
Sample A Male 3.1
Sample B Male 5.1
Sample C Female 6.0
Sample D Female 4.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
71213755 Antisense, RP_050816_04_E10, Mouse strain C57BL/6J (56 days, male) 0.4
1265 Antisense, RP_Baylor_103343, Mouse strain C57BL/6J (56 days, male) 0.2
1266 Antisense, RP_Baylor_103343, Mouse strain C57BL/6J (56 days, male) 0.0

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