MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.7 nTPM
HPA Brain:166.6 nTPM
GTEx:57.7 nTPM
FANTOM5:169.3 Scaled Tags Per Million
Pig:18.3 nTPM
Mouse:7.3 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 166.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 131.3
2411 Female, age 72, unknown 164.4
1830 Male, age 51, unknown 159.3
2019 Male, age 18, unknown 152.6
1833 Male, age 53, unknown 146.7
2828 Female, age 72, unknown 132.2
2586 Male, age 75, left hemisphere 130.7
1870 Female, age 42, unknown 128.1
2219 Male, age 76, both hemispheres 107.1
1827 Male, age 72, unknown 100.5
2666 Male, age 74, left hemisphere 91.5
Dorsal raphe nucleus
nTPM: 98.3
2750 Male, age 76, both hemispheres 163.0
2016 Female, age 72, unknown 103.3
1828 Male, age 53, unknown 94.3
2047 Male, age 72, unknown 68.7
2298 Female, age 72, unknown 62.1
Inferior colliculus
nTPM: 85.0
2849 Male, age 72, unknown 95.1
1890 Male, age 53, unknown 89.6
1848 Female, age 42, unknown 86.5
2097 Female, age 72, unknown 68.6
Median raphe nucleus
nTPM: 73.2
2220 Male, age 76, midline 73.2
Periaquaductal grey, anterior
nTPM: 90.6
2502 Female, age 75, unknown 92.2
1947 Male, age 18, unknown 92.1
1795 Male, age 51, unknown 87.5
Periaquaductal grey, dorsal
nTPM: 79.8
2464 Female, age 72, unknown 120.7
1831 Male, age 72, unknown 84.8
2850 Male, age 76, both hemispheres 59.7
1840 Male, age 53, unknown 53.8
Periaquaductal grey, lateral
nTPM: 91.1
2272 Male, age 74, both hemispheres 111.4
2053 Male, age 18, unknown 97.1
2140 Male, age 76, both hemispheres 65.0
Pretectal area
nTPM: 103.2
2316 Male, age 76, right hemisphere 173.6
2667 Female, age 75, unknown 145.2
2407 Male, age 75, both hemispheres 128.5
1815 Male, age 53, unknown 118.2
2273 Male, age 74, both hemispheres 101.5
2825 Male, age 18, unknown 90.8
2007 Male, age 72, unknown 86.7
1817 Female, age 42, unknown 84.9
2224 Female, age 72, unknown 76.3
1944 Female, age 72, unknown 67.7
1816 Male, age 51, unknown 62.2
Red nucleus
nTPM: 166.6
2823 Male, age 76, right hemisphere 248.7
1865 Male, age 51, unknown 192.4
1904 Male, age 53, unknown 183.7
2227 Male, age 72, unknown 180.7
2769 Male, age 72, unknown 176.0
2503 Female, age 72, unknown 171.1
2785 Male, age 18, unknown 168.7
2588 Male, age 74, left hemisphere 160.3
2584 Male, age 75, left hemisphere 140.9
1821 Female, age 72, unknown 135.2
1954 Female, age 42, unknown 123.3
2725 Female, age 75, unknown 117.5
Substantia nigra
nTPM: 93.1
2583 Male, age 75, right hemisphere 122.8
2409 Female, age 72, unknown 120.9
1851 Male, age 51, unknown 115.4
2699 Male, age 18, unknown 104.0
2590 Female, age 75, unknown 103.7
1889 Female, age 72, unknown 84.2
1941 Male, age 53, unknown 80.4
2241 Male, age 72, unknown 74.9
2665 Male, age 74, both hemispheres 68.3
1916 Female, age 42, unknown 56.9
Superior colliculus
nTPM: 118.9
1913 Female, age 42, unknown 201.7
1995 Male, age 72, unknown 177.5
1895 Male, age 76, right hemisphere 151.6
1839 Male, age 51, unknown 107.4
2587 Male, age 74, left hemisphere 104.8
1796 Male, age 53, unknown 98.2
2664 Male, age 75, both hemispheres 95.0
2668 Female, age 75, unknown 91.2
2087 Female, age 72, unknown 82.8
2261 Male, age 18, unknown 78.4
Ventral tegmental area
nTPM: 107.7
2410 Female, age 72, unknown 145.3
2223 Female, age 72, unknown 125.1
2021 Male, age 53, unknown 114.8
1942 Male, age 51, unknown 97.2
2218 Male, age 76, both hemispheres 88.7
1915 Female, age 42, unknown 75.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.7
Samples: 139

Max nTPM: 213.8
Min nTPM: 14.0
Std nTPM: 32.4
Median nTPM: 51.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 213.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 162.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 152.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 147.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 144.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 133.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 128.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 125.4
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 111.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 109.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 109.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 169.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 169.3
FF:10158-103A5 76 years, female 169.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.4
Samples: 4

Max nTPM: 28.9
Min nTPM: 13.1
Sample A Female 17.9
Sample B Female 13.5
Sample C Male 13.1
Sample D Male 28.9
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 36.5
Min nTPM: 7.7
Sample A Female 36.5
Sample B Female 9.4
Sample C Male 7.7
Sample D Male 9.5
Periaqueductal gray
nTPM: 7.0
Samples: 3

Max nTPM: 7.5
Min nTPM: 6.4
Sample B Female 7.2
Sample C Male 6.4
Sample D Male 7.5
Superior colliculi
nTPM: 10.5
Samples: 4

Max nTPM: 14.1
Min nTPM: 4.3
Sample A Female 14.1
Sample B Female 4.3
Sample C Male 9.9
Sample D Male 13.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.3
Samples: 4

Max nTPM: 7.6
Min nTPM: 6.8
Sample A Male 7.4
Sample B Male 7.2
Sample C Female 7.6
Sample D Female 6.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
1265 Antisense, RP_Baylor_103343, Mouse strain C57BL/6J (56 days, male) 0.4
71213755 Antisense, RP_050816_04_E10, Mouse strain C57BL/6J (56 days, male) 0.4
1266 Antisense, RP_Baylor_103343, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org