MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:202.2 nTPM
HPA Brain:147.0 nTPM
GTEx:202.2 nTPM
FANTOM5:67.7 Scaled Tags Per Million
Pig:23.9 nTPM
Mouse:112.8 nTPM
Allen mouse:9.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 147.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 104.5
2586 Male, age 75, left hemisphere 136.5
2411 Female, age 72, unknown 130.2
2828 Female, age 72, unknown 114.5
1827 Male, age 72, unknown 109.1
1870 Female, age 42, unknown 103.3
1833 Male, age 53, unknown 99.0
1830 Male, age 51, unknown 96.5
2219 Male, age 76, both hemispheres 90.0
2666 Male, age 74, left hemisphere 83.0
2019 Male, age 18, unknown 82.5
Dorsal raphe nucleus
nTPM: 141.2
2298 Female, age 72, unknown 194.4
2047 Male, age 72, unknown 150.8
2016 Female, age 72, unknown 123.8
1828 Male, age 53, unknown 122.5
2750 Male, age 76, both hemispheres 114.7
Inferior colliculus
nTPM: 119.9
2097 Female, age 72, unknown 140.3
1848 Female, age 42, unknown 119.0
1890 Male, age 53, unknown 115.8
2849 Male, age 72, unknown 104.7
Median raphe nucleus
nTPM: 140.7
2220 Male, age 76, midline 140.7
Periaquaductal grey, anterior
nTPM: 147.0
1947 Male, age 18, unknown 164.7
2502 Female, age 75, unknown 142.7
1795 Male, age 51, unknown 133.5
Periaquaductal grey, dorsal
nTPM: 119.8
1840 Male, age 53, unknown 141.0
2850 Male, age 76, both hemispheres 121.3
2464 Female, age 72, unknown 120.0
1831 Male, age 72, unknown 97.0
Periaquaductal grey, lateral
nTPM: 114.3
2140 Male, age 76, both hemispheres 129.1
2053 Male, age 18, unknown 108.9
2272 Male, age 74, both hemispheres 105.0
Pretectal area
nTPM: 106.6
2224 Female, age 72, unknown 141.5
2273 Male, age 74, both hemispheres 122.0
2825 Male, age 18, unknown 121.2
2316 Male, age 76, right hemisphere 116.3
1817 Female, age 42, unknown 106.6
2007 Male, age 72, unknown 102.6
2667 Female, age 75, unknown 101.5
1944 Female, age 72, unknown 96.1
1816 Male, age 51, unknown 93.6
1815 Male, age 53, unknown 92.6
2407 Male, age 75, both hemispheres 78.9
Red nucleus
nTPM: 101.3
2503 Female, age 72, unknown 125.0
2227 Male, age 72, unknown 115.3
1821 Female, age 72, unknown 114.7
2725 Female, age 75, unknown 114.6
2769 Male, age 72, unknown 112.0
1954 Female, age 42, unknown 107.3
1904 Male, age 53, unknown 94.3
2588 Male, age 74, left hemisphere 91.0
2785 Male, age 18, unknown 86.9
2823 Male, age 76, right hemisphere 86.5
1865 Male, age 51, unknown 85.5
2584 Male, age 75, left hemisphere 82.0
Substantia nigra
nTPM: 118.1
1916 Female, age 42, unknown 168.4
1851 Male, age 51, unknown 145.8
2241 Male, age 72, unknown 125.3
2699 Male, age 18, unknown 121.7
1941 Male, age 53, unknown 115.4
1889 Female, age 72, unknown 113.3
2665 Male, age 74, both hemispheres 101.6
2590 Female, age 75, unknown 101.5
2409 Female, age 72, unknown 96.1
2583 Male, age 75, right hemisphere 92.2
Superior colliculus
nTPM: 105.2
1796 Male, age 53, unknown 131.9
1839 Male, age 51, unknown 119.1
2261 Male, age 18, unknown 116.0
2668 Female, age 75, unknown 111.4
2087 Female, age 72, unknown 102.6
2664 Male, age 75, both hemispheres 98.6
2587 Male, age 74, left hemisphere 97.8
1995 Male, age 72, unknown 93.6
1895 Male, age 76, right hemisphere 92.2
1913 Female, age 42, unknown 89.0
Ventral tegmental area
nTPM: 134.8
1915 Female, age 42, unknown 155.6
1942 Male, age 51, unknown 144.9
2410 Female, age 72, unknown 132.8
2021 Male, age 53, unknown 132.1
2218 Male, age 76, both hemispheres 121.8
2223 Female, age 72, unknown 121.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 202.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 202.2
Samples: 139

Max nTPM: 466.6
Min nTPM: 84.3
Std nTPM: 67.7
Median nTPM: 194.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 466.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 447.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 430.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 398.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 369.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 362.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 340.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 331.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 321.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 321.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 291.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.7
FF:10158-103A5 76 years, female 67.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.4
Samples: 4

Max nTPM: 30.8
Min nTPM: 17.9
Sample A Female 24.1
Sample B Female 30.8
Sample C Male 20.8
Sample D Male 17.9
Midbrain
nTPM: 16.0
Samples: 4

Max nTPM: 19.1
Min nTPM: 8.2
Sample A Female 17.5
Sample B Female 19.1
Sample C Male 19.0
Sample D Male 8.2
Periaqueductal gray
nTPM: 9.8
Samples: 3

Max nTPM: 11.7
Min nTPM: 6.4
Sample B Female 11.7
Sample C Male 11.4
Sample D Male 6.4
Superior colliculi
nTPM: 23.9
Samples: 4

Max nTPM: 31.3
Min nTPM: 15.1
Sample A Female 22.3
Sample B Female 26.9
Sample C Male 31.3
Sample D Male 15.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 112.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 112.9
Samples: 4

Max nTPM: 148.6
Min nTPM: 85.4
Sample A Male 148.6
Sample B Male 101.0
Sample C Female 85.4
Sample D Female 116.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
641541 Antisense, RP_040914_01_F12, Mouse strain C57BL/6J (56 days, male) 9.1

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