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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
77203.3
nTPM
HPA Brain:
23686.3
nTPM
GTEx:
77203.3
nTPM
Pig:
26871.7
nTPM
Mouse:
6008.5
nTPM
Allen mouse:
0.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA063296
Glial cells
Not detected
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM
23686.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 23686.3
2621
Female, age 67, right hemisphere
43793.8
1855
Male, age 76, left hemisphere
25700.3
2529
Female, age 94, left hemisphere
23233.1
2148
Female, age 91, left hemisphere
20510.1
1911
Female, age 85, right hemisphere
17799.6
1898
Male, age 80, left hemisphere
11080.9
Dentate gyrus nTPM: 19673.9
2531
Female, age 67, both hemispheres
35707.4
2530
Female, age 94, left hemisphere
30877.4
2246
Female, age 85, both hemispheres
24345.7
2010
Male, age 76, both hemispheres
10622.9
1927
Female, age 91, both hemispheres
8442.1
2528
Male, age 74, both hemispheres
8048.1
Entorhinal gyrus nTPM: 16819.2
2686
Male, age 75, right hemisphere
35887.1
2613
Female, age 94, left hemisphere
21773.7
1938
Female, age 85, left hemisphere
12997.1
2117
Female, age 91, right hemisphere
12427.6
1787
Male, age 76, left hemisphere
9716.5
2764
Male, age 80, right hemisphere
8113.4
Hippocampus, CA1 nTPM: 12645.7
2527
Male, age 74, both hemispheres
19955.5
2045
Male, age 76, both hemispheres
14457.9
1873
Female, age 85, both hemispheres
12882.6
2749
Male, age 80, left hemisphere
9794.5
2082
Female, age 91, right hemisphere
6138.1
Hippocampus, CA2 nTPM: 12317.8
2437
Female, age 94, left hemisphere
24206.8
1892
Male, age 76, both hemispheres
15229.2
1940
Female, age 85, left hemisphere
14796.2
2113
Female, age 91, right hemisphere
9079.4
2249
Male, age 74, both hemispheres
5465.5
1963
Male, age 80, left hemisphere
5129.7
Hippocampus, CA3 nTPM: 23362.0
2861
Female, age 67, both hemispheres
75367.3
2620
Female, age 94, left hemisphere
17173.8
1867
Male, age 76, both hemispheres
13599.5
1891
Female, age 85, both hemispheres
13333.2
2137
Male, age 80, left hemisphere
11349.1
2436
Male, age 74, both hemispheres
9349.2
Parahippocampal cortex nTPM: 20324.2
2622
Female, age 67, right hemisphere
36747.8
2245
Female, age 91, both hemispheres
35974.7
2692
Male, age 74, both hemispheres
32415.6
2532
Female, age 72, left hemisphere
25569.3
2693
Female, age 94, both hemispheres
16127.2
2018
Male, age 76, both hemispheres
13904.0
2250
Female, age 67, right hemisphere
13476.7
1933
Female, age 85, both hemispheres
11938.6
1850
Male, age 80, both hemispheres
9928.9
1990
Female, age 91, right hemisphere
7159.2
Perirhinal gyrus nTPM: 8712.5
2848
Male, age 76, right hemisphere
13542.1
2521
Female, age 94, right hemisphere
9348.1
1841
Female, age 85, right hemisphere
8761.7
1847
Female, age 91, left hemisphere
6057.3
1794
Male, age 80, right hemisphere
5853.5
Subiculum nTPM: 16768.9
2438
Female, age 94, left hemisphere
28581.6
2619
Male, age 74, both hemispheres
21953.5
2042
Male, age 76, both hemispheres
20956.3
1901
Male, age 80, both hemispheres
14361.1
1977
Female, age 85, both hemispheres
8699.7
2729
Female, age 91, right hemisphere
6061.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
77203.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 77203.3
Samples: 197
Max nTPM: 378862.7
Min nTPM: 7222.3
Std nTPM: 56913.2
Median nTPM: 58056.6
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
6008.5
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 6008.5
Samples: 4
Max nTPM: 7763.0
Min nTPM: 4317.9
Sample A
Male
5791.4
Sample B
Male
4317.9
Sample C
Female
6161.6
Sample D
Female
7763.0
Hippocampal formation nTPM: 5116.4
Samples: 4
Max nTPM: 6559.0
Min nTPM: 3956.2
Sample A
Male
6559.0
Sample B
Male
4461.8
Sample C
Female
5488.5
Sample D
Female
3956.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
