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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
64292.8
nTPM
HPA Brain:
41364.5
nTPM
GTEx:
64292.8
nTPM
Pig:
22979.7
nTPM
Mouse:
5516.8
nTPM
Allen mouse:
0.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
41364.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 27436.3
2586
Male, age 75, left hemisphere
45480.5
2666
Male, age 74, left hemisphere
41223.5
2219
Male, age 76, both hemispheres
40681.9
2828
Female, age 72, unknown
29746.8
1870
Female, age 42, unknown
28348.8
1833
Male, age 53, unknown
25516.4
1830
Male, age 51, unknown
23040.0
1827
Male, age 72, unknown
15948.1
2019
Male, age 18, unknown
13236.9
2411
Female, age 72, unknown
11140.2
Dorsal raphe nucleus nTPM: 14377.4
1828
Male, age 53, unknown
21016.2
2047
Male, age 72, unknown
17062.6
2750
Male, age 76, both hemispheres
14984.7
2016
Female, age 72, unknown
13532.1
2298
Female, age 72, unknown
5291.4
Inferior colliculus nTPM: 25177.4
2849
Male, age 72, unknown
51267.0
1890
Male, age 53, unknown
23134.2
1848
Female, age 42, unknown
19101.8
2097
Female, age 72, unknown
7206.8
Median raphe nucleus nTPM: 41364.5
2220
Male, age 76, midline
41364.5
Periaquaductal grey, anterior nTPM: 14220.0
2502
Female, age 75, unknown
17519.7
1795
Male, age 51, unknown
13604.3
1947
Male, age 18, unknown
11536.0
Periaquaductal grey, dorsal nTPM: 24747.3
2850
Male, age 76, both hemispheres
48199.9
1831
Male, age 72, unknown
18858.7
1840
Male, age 53, unknown
16033.7
2464
Female, age 72, unknown
15896.7
Periaquaductal grey, lateral nTPM: 12856.7
2140
Male, age 76, both hemispheres
16602.5
2053
Male, age 18, unknown
15194.0
2272
Male, age 74, both hemispheres
6773.4
Pretectal area nTPM: 21574.1
1944
Female, age 72, unknown
33777.0
2667
Female, age 75, unknown
31857.9
1816
Male, age 51, unknown
28963.0
1817
Female, age 42, unknown
28442.8
1815
Male, age 53, unknown
24452.1
2825
Male, age 18, unknown
24343.2
2007
Male, age 72, unknown
22427.7
2407
Male, age 75, both hemispheres
17638.7
2224
Female, age 72, unknown
10984.5
2316
Male, age 76, right hemisphere
7953.6
2273
Male, age 74, both hemispheres
6474.5
Red nucleus nTPM: 25611.0
2503
Female, age 72, unknown
33790.4
2588
Male, age 74, left hemisphere
32271.6
2584
Male, age 75, left hemisphere
31150.4
1865
Male, age 51, unknown
30778.7
1954
Female, age 42, unknown
29419.2
2823
Male, age 76, right hemisphere
28838.5
2785
Male, age 18, unknown
24512.5
1904
Male, age 53, unknown
21748.2
2227
Male, age 72, unknown
20562.1
2769
Male, age 72, unknown
20009.4
2725
Female, age 75, unknown
19660.5
1821
Female, age 72, unknown
14590.9
Substantia nigra nTPM: 25732.2
2699
Male, age 18, unknown
50375.0
2665
Male, age 74, both hemispheres
46146.5
1916
Female, age 42, unknown
32553.9
1941
Male, age 53, unknown
23992.0
1889
Female, age 72, unknown
22500.4
2241
Male, age 72, unknown
20774.2
2583
Male, age 75, right hemisphere
20046.9
1851
Male, age 51, unknown
14534.7
2590
Female, age 75, unknown
13379.9
2409
Female, age 72, unknown
13018.8
Superior colliculus nTPM: 20985.7
2664
Male, age 75, both hemispheres
42351.9
2587
Male, age 74, left hemisphere
26529.6
1913
Female, age 42, unknown
20890.3
2087
Female, age 72, unknown
20754.2
2668
Female, age 75, unknown
20648.3
1895
Male, age 76, right hemisphere
18613.6
1839
Male, age 51, unknown
17150.1
1995
Male, age 72, unknown
15293.5
1796
Male, age 53, unknown
14724.7
2261
Male, age 18, unknown
12901.3
Ventral tegmental area nTPM: 21106.1
2218
Male, age 76, both hemispheres
34868.3
2223
Female, age 72, unknown
25693.0
1942
Male, age 51, unknown
21274.2
1915
Female, age 42, unknown
18166.0
2021
Male, age 53, unknown
16343.6
2410
Female, age 72, unknown
10291.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
64292.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 64292.8
Samples: 139
Max nTPM: 190054.3
Min nTPM: 12530.4
Std nTPM: 41075.8
Median nTPM: 51702.1
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
5516.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 5516.8
Samples: 4
Max nTPM: 6535.5
Min nTPM: 4673.5
Sample A
Male
4917.4
Sample B
Male
4673.5
Sample C
Female
5940.8
Sample D
Female
6535.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
