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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
93613.9
nTPM
HPA Brain:
43022.1
nTPM
GTEx:
93613.9
nTPM
Pig:
12820.8
nTPM
Mouse:
12133.4
nTPM
Allen mouse:
7.6
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA053928
Glial cells
Not detected
Neuronal cells
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM
43022.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 43022.1
2621
Female, age 67, right hemisphere
69888.9
1855
Male, age 76, left hemisphere
50369.9
2529
Female, age 94, left hemisphere
48089.1
2148
Female, age 91, left hemisphere
38987.5
1911
Female, age 85, right hemisphere
31029.6
1898
Male, age 80, left hemisphere
19767.5
Dentate gyrus nTPM: 39133.0
2530
Female, age 94, left hemisphere
69220.7
2531
Female, age 67, both hemispheres
61681.0
2246
Female, age 85, both hemispheres
40124.8
2010
Male, age 76, both hemispheres
27306.6
2528
Male, age 74, both hemispheres
20058.2
1927
Female, age 91, both hemispheres
16406.9
Entorhinal gyrus nTPM: 30251.4
2686
Male, age 75, right hemisphere
55494.4
2613
Female, age 94, left hemisphere
42227.0
2117
Female, age 91, right hemisphere
23858.0
1938
Female, age 85, left hemisphere
22126.9
1787
Male, age 76, left hemisphere
19859.2
2764
Male, age 80, right hemisphere
17942.7
Hippocampus, CA1 nTPM: 25127.3
2527
Male, age 74, both hemispheres
35700.0
2045
Male, age 76, both hemispheres
30666.9
1873
Female, age 85, both hemispheres
22672.8
2749
Male, age 80, left hemisphere
22588.3
2082
Female, age 91, right hemisphere
14008.7
Hippocampus, CA2 nTPM: 24746.1
2437
Female, age 94, left hemisphere
47666.3
1892
Male, age 76, both hemispheres
30341.2
1940
Female, age 85, left hemisphere
22341.4
2113
Female, age 91, right hemisphere
20213.6
2249
Male, age 74, both hemispheres
15365.8
1963
Male, age 80, left hemisphere
12548.0
Hippocampus, CA3 nTPM: 41332.4
2861
Female, age 67, both hemispheres
112771.3
2620
Female, age 94, left hemisphere
36486.0
1867
Male, age 76, both hemispheres
27287.9
2137
Male, age 80, left hemisphere
27047.0
2436
Male, age 74, both hemispheres
23276.4
1891
Female, age 85, both hemispheres
21125.6
Parahippocampal cortex nTPM: 35413.2
2622
Female, age 67, right hemisphere
59969.3
2245
Female, age 91, both hemispheres
57193.5
2692
Male, age 74, both hemispheres
49665.3
2532
Female, age 72, left hemisphere
42875.5
2018
Male, age 76, both hemispheres
35520.7
2250
Female, age 67, right hemisphere
29544.3
2693
Female, age 94, both hemispheres
28223.0
1933
Female, age 85, both hemispheres
19059.0
1850
Male, age 80, both hemispheres
17386.5
1990
Female, age 91, right hemisphere
14695.0
Perirhinal gyrus nTPM: 17231.9
2848
Male, age 76, right hemisphere
26789.9
2521
Female, age 94, right hemisphere
19826.3
1841
Female, age 85, right hemisphere
15638.6
1847
Female, age 91, left hemisphere
12286.7
1794
Male, age 80, right hemisphere
11618.1
Subiculum nTPM: 32107.1
2438
Female, age 94, left hemisphere
61549.1
2619
Male, age 74, both hemispheres
38877.0
2042
Male, age 76, both hemispheres
37665.9
1901
Male, age 80, both hemispheres
22624.1
1977
Female, age 85, both hemispheres
17448.2
2729
Female, age 91, right hemisphere
14478.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
93613.9
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 93613.9
Samples: 197
Max nTPM: 414509.2
Min nTPM: 6325.1
Std nTPM: 71933.8
Median nTPM: 73092.2
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
12133.4
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 12133.4
Samples: 4
Max nTPM: 12871.7
Min nTPM: 10546.5
Sample A
Male
12871.7
Sample B
Male
10546.5
Sample C
Female
12714.0
Sample D
Female
12401.5
Hippocampal formation nTPM: 10752.1
Samples: 4
Max nTPM: 12542.1
Min nTPM: 9552.9
Sample A
Male
12542.1
Sample B
Male
10304.8
Sample C
Female
10608.5
Sample D
Female
9552.9
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
