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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
76343.9
nTPM
HPA Brain:
64388.0
nTPM
GTEx:
76343.9
nTPM
Pig:
9641.8
nTPM
Mouse:
10220.7
nTPM
Allen mouse:
5.6
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
64388.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 45302.4
2586
Male, age 75, left hemisphere
71339.0
2219
Male, age 76, both hemispheres
69015.3
2828
Female, age 72, unknown
56177.7
2666
Male, age 74, left hemisphere
56114.8
1833
Male, age 53, unknown
43187.7
1830
Male, age 51, unknown
39868.0
1870
Female, age 42, unknown
39088.9
1827
Male, age 72, unknown
29617.1
2019
Male, age 18, unknown
28786.9
2411
Female, age 72, unknown
19829.1
Dorsal raphe nucleus nTPM: 27240.1
1828
Male, age 53, unknown
42283.7
2047
Male, age 72, unknown
31682.6
2750
Male, age 76, both hemispheres
27041.7
2016
Female, age 72, unknown
23799.1
2298
Female, age 72, unknown
11393.7
Inferior colliculus nTPM: 37706.7
2849
Male, age 72, unknown
65685.7
1890
Male, age 53, unknown
37750.7
1848
Female, age 42, unknown
31662.7
2097
Female, age 72, unknown
15727.5
Median raphe nucleus nTPM: 64388.0
2220
Male, age 76, midline
64388.0
Periaquaductal grey, anterior nTPM: 26355.0
2502
Female, age 75, unknown
33552.1
1795
Male, age 51, unknown
24000.5
1947
Male, age 18, unknown
21512.3
Periaquaductal grey, dorsal nTPM: 39853.3
2850
Male, age 76, both hemispheres
68734.3
1831
Male, age 72, unknown
34776.0
2464
Female, age 72, unknown
31397.2
1840
Male, age 53, unknown
24505.4
Periaquaductal grey, lateral nTPM: 25019.8
2140
Male, age 76, both hemispheres
33703.4
2053
Male, age 18, unknown
24997.9
2272
Male, age 74, both hemispheres
16358.0
Pretectal area nTPM: 37108.1
1816
Male, age 51, unknown
53573.2
1944
Female, age 72, unknown
51900.4
2667
Female, age 75, unknown
50446.9
1817
Female, age 42, unknown
50343.3
1815
Male, age 53, unknown
44164.8
2007
Male, age 72, unknown
40107.9
2825
Male, age 18, unknown
38312.7
2407
Male, age 75, both hemispheres
29644.3
2224
Female, age 72, unknown
19821.4
2316
Male, age 76, right hemisphere
15508.2
2273
Male, age 74, both hemispheres
14365.9
Red nucleus nTPM: 41995.3
2503
Female, age 72, unknown
54465.5
2588
Male, age 74, left hemisphere
54281.9
2584
Male, age 75, left hemisphere
52213.7
1954
Female, age 42, unknown
45786.3
2823
Male, age 76, right hemisphere
45386.9
1865
Male, age 51, unknown
44650.8
2785
Male, age 18, unknown
40819.6
2227
Male, age 72, unknown
37528.2
2769
Male, age 72, unknown
35661.3
1904
Male, age 53, unknown
35374.6
2725
Female, age 75, unknown
30588.3
1821
Female, age 72, unknown
27186.0
Substantia nigra nTPM: 41891.3
2699
Male, age 18, unknown
75170.4
2665
Male, age 74, both hemispheres
68663.0
1916
Female, age 42, unknown
54275.5
1941
Male, age 53, unknown
43172.4
1889
Female, age 72, unknown
36868.1
2583
Male, age 75, right hemisphere
33824.8
2241
Male, age 72, unknown
29051.8
2590
Female, age 75, unknown
27721.4
1851
Male, age 51, unknown
26957.5
2409
Female, age 72, unknown
23208.6
Superior colliculus nTPM: 35614.6
2664
Male, age 75, both hemispheres
65466.4
2087
Female, age 72, unknown
39126.2
2587
Male, age 74, left hemisphere
38698.5
1913
Female, age 42, unknown
35093.4
2668
Female, age 75, unknown
33162.6
1839
Male, age 51, unknown
32013.7
1895
Male, age 76, right hemisphere
30888.3
1995
Male, age 72, unknown
29264.3
2261
Male, age 18, unknown
26423.8
1796
Male, age 53, unknown
26008.3
Ventral tegmental area nTPM: 36319.4
2218
Male, age 76, both hemispheres
54848.8
2223
Female, age 72, unknown
44880.4
1942
Male, age 51, unknown
35392.9
1915
Female, age 42, unknown
31315.0
2021
Male, age 53, unknown
28014.3
2410
Female, age 72, unknown
23465.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
76343.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 76343.9
Samples: 139
Max nTPM: 280707.5
Min nTPM: 10633.6
Std nTPM: 53996.8
Median nTPM: 58288.2
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
10220.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 10220.7
Samples: 4
Max nTPM: 10680.2
Min nTPM: 9752.2
Sample A
Male
10680.2
Sample B
Male
10053.7
Sample C
Female
10396.5
Sample D
Female
9752.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
