MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.4 nTPM
HPA Brain:94.8 nTPM
GTEx:52.4 nTPM
FANTOM5:101.0 Scaled Tags Per Million
Pig:112.7 nTPM
Mouse:57.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 94.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.9
2586 Male, age 75, left hemisphere 149.5
2828 Female, age 72, unknown 97.2
2019 Male, age 18, unknown 85.0
2411 Female, age 72, unknown 84.7
1830 Male, age 51, unknown 83.3
1833 Male, age 53, unknown 82.4
2666 Male, age 74, left hemisphere 82.3
1870 Female, age 42, unknown 77.6
1827 Male, age 72, unknown 73.7
2219 Male, age 76, both hemispheres 63.1
Dorsal raphe nucleus
nTPM: 75.2
2750 Male, age 76, both hemispheres 82.5
1828 Male, age 53, unknown 80.1
2047 Male, age 72, unknown 80.1
2016 Female, age 72, unknown 69.6
2298 Female, age 72, unknown 63.6
Inferior colliculus
nTPM: 64.3
1848 Female, age 42, unknown 67.2
1890 Male, age 53, unknown 67.1
2849 Male, age 72, unknown 66.5
2097 Female, age 72, unknown 56.5
Median raphe nucleus
nTPM: 68.7
2220 Male, age 76, midline 68.7
Periaquaductal grey, anterior
nTPM: 75.0
1947 Male, age 18, unknown 79.0
1795 Male, age 51, unknown 74.0
2502 Female, age 75, unknown 72.1
Periaquaductal grey, dorsal
nTPM: 61.6
2464 Female, age 72, unknown 70.8
2850 Male, age 76, both hemispheres 64.8
1831 Male, age 72, unknown 57.5
1840 Male, age 53, unknown 53.4
Periaquaductal grey, lateral
nTPM: 61.3
2053 Male, age 18, unknown 65.9
2140 Male, age 76, both hemispheres 63.8
2272 Male, age 74, both hemispheres 54.2
Pretectal area
nTPM: 75.9
2007 Male, age 72, unknown 103.4
1817 Female, age 42, unknown 90.5
1815 Male, age 53, unknown 85.2
2316 Male, age 76, right hemisphere 77.3
2667 Female, age 75, unknown 77.1
1816 Male, age 51, unknown 75.1
2407 Male, age 75, both hemispheres 73.1
1944 Female, age 72, unknown 71.3
2825 Male, age 18, unknown 70.9
2224 Female, age 72, unknown 57.4
2273 Male, age 74, both hemispheres 54.1
Red nucleus
nTPM: 94.8
2588 Male, age 74, left hemisphere 111.2
2823 Male, age 76, right hemisphere 108.9
2769 Male, age 72, unknown 99.2
2503 Female, age 72, unknown 98.0
2227 Male, age 72, unknown 95.9
1865 Male, age 51, unknown 95.2
1904 Male, age 53, unknown 92.9
2584 Male, age 75, left hemisphere 91.4
2785 Male, age 18, unknown 90.6
1821 Female, age 72, unknown 89.5
1954 Female, age 42, unknown 88.9
2725 Female, age 75, unknown 75.4
Substantia nigra
nTPM: 77.4
2583 Male, age 75, right hemisphere 102.2
1851 Male, age 51, unknown 89.3
1916 Female, age 42, unknown 82.3
1889 Female, age 72, unknown 81.5
2665 Male, age 74, both hemispheres 80.4
2699 Male, age 18, unknown 76.3
1941 Male, age 53, unknown 74.9
2590 Female, age 75, unknown 71.6
2241 Male, age 72, unknown 57.9
2409 Female, age 72, unknown 57.2
Superior colliculus
nTPM: 77.3
2668 Female, age 75, unknown 102.9
2664 Male, age 75, both hemispheres 91.9
1796 Male, age 53, unknown 77.3
1995 Male, age 72, unknown 76.2
1913 Female, age 42, unknown 75.1
2261 Male, age 18, unknown 74.6
1839 Male, age 51, unknown 72.8
1895 Male, age 76, right hemisphere 70.2
2087 Female, age 72, unknown 67.6
2587 Male, age 74, left hemisphere 63.9
Ventral tegmental area
nTPM: 71.2
2410 Female, age 72, unknown 77.9
2223 Female, age 72, unknown 73.8
1915 Female, age 42, unknown 71.7
2218 Male, age 76, both hemispheres 70.0
2021 Male, age 53, unknown 68.1
1942 Male, age 51, unknown 65.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.4
Samples: 139

Max nTPM: 126.0
Min nTPM: 18.3
Std nTPM: 18.9
Median nTPM: 48.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 126.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 113.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 97.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 96.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 88.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 88.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 87.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 86.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 85.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 85.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 80.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.0
FF:10158-103A5 76 years, female 101.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 112.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 86.0
Samples: 4

Max nTPM: 109.3
Min nTPM: 67.3
Sample A Female 83.1
Sample B Female 67.3
Sample C Male 84.4
Sample D Male 109.3
Midbrain
nTPM: 102.9
Samples: 4

Max nTPM: 152.1
Min nTPM: 82.3
Sample A Female 86.1
Sample B Female 91.2
Sample C Male 152.1
Sample D Male 82.3
Periaqueductal gray
nTPM: 66.4
Samples: 3

Max nTPM: 79.3
Min nTPM: 57.1
Sample B Female 79.3
Sample C Male 57.1
Sample D Male 62.8
Superior colliculi
nTPM: 112.8
Samples: 4

Max nTPM: 161.5
Min nTPM: 73.1
Sample A Female 95.3
Sample B Female 73.1
Sample C Male 161.5
Sample D Male 121.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 57.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.7
Samples: 4

Max nTPM: 61.5
Min nTPM: 51.9
Sample A Male 61.5
Sample B Male 51.9
Sample C Female 55.7
Sample D Female 61.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
72283504 Antisense, RP_051019_01_E08, Mouse strain C57BL/6J (56 days, male) 0.0

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