MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.1 nTPM
HPA Brain:123.2 nTPM
GTEx:48.1 nTPM
FANTOM5:4.4 Scaled Tags Per Million
Pig:24.1 nTPM
Mouse:38.7 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 123.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.3
2586 Male, age 75, left hemisphere 127.7
2219 Male, age 76, both hemispheres 108.7
1827 Male, age 72, unknown 88.4
2828 Female, age 72, unknown 85.5
2411 Female, age 72, unknown 67.4
2666 Male, age 74, left hemisphere 65.7
2019 Male, age 18, unknown 64.0
1833 Male, age 53, unknown 63.8
1830 Male, age 51, unknown 55.6
1870 Female, age 42, unknown 46.4
Dorsal raphe nucleus
nTPM: 57.9
1828 Male, age 53, unknown 66.8
2047 Male, age 72, unknown 61.7
2016 Female, age 72, unknown 59.9
2298 Female, age 72, unknown 57.8
2750 Male, age 76, both hemispheres 43.3
Inferior colliculus
nTPM: 84.3
1890 Male, age 53, unknown 103.9
2097 Female, age 72, unknown 86.5
1848 Female, age 42, unknown 77.4
2849 Male, age 72, unknown 69.4
Median raphe nucleus
nTPM: 44.0
2220 Male, age 76, midline 44.0
Periaquaductal grey, anterior
nTPM: 72.1
2502 Female, age 75, unknown 93.6
1795 Male, age 51, unknown 65.9
1947 Male, age 18, unknown 56.7
Periaquaductal grey, dorsal
nTPM: 63.3
1840 Male, age 53, unknown 75.7
2464 Female, age 72, unknown 69.7
1831 Male, age 72, unknown 67.9
2850 Male, age 76, both hemispheres 39.8
Periaquaductal grey, lateral
nTPM: 52.8
2053 Male, age 18, unknown 65.6
2140 Male, age 76, both hemispheres 52.7
2272 Male, age 74, both hemispheres 40.1
Pretectal area
nTPM: 72.4
1816 Male, age 51, unknown 112.9
1944 Female, age 72, unknown 110.5
1817 Female, age 42, unknown 91.6
2007 Male, age 72, unknown 86.8
1815 Male, age 53, unknown 80.4
2667 Female, age 75, unknown 66.4
2825 Male, age 18, unknown 56.4
2407 Male, age 75, both hemispheres 52.8
2316 Male, age 76, right hemisphere 50.8
2224 Female, age 72, unknown 47.0
2273 Male, age 74, both hemispheres 41.1
Red nucleus
nTPM: 67.5
2588 Male, age 74, left hemisphere 96.6
1904 Male, age 53, unknown 72.8
2584 Male, age 75, left hemisphere 71.6
1954 Female, age 42, unknown 69.9
2503 Female, age 72, unknown 69.3
2227 Male, age 72, unknown 65.3
2769 Male, age 72, unknown 65.2
1821 Female, age 72, unknown 63.8
2785 Male, age 18, unknown 63.0
2725 Female, age 75, unknown 61.0
1865 Male, age 51, unknown 58.7
2823 Male, age 76, right hemisphere 52.6
Substantia nigra
nTPM: 123.2
1916 Female, age 42, unknown 205.5
2665 Male, age 74, both hemispheres 167.0
1851 Male, age 51, unknown 144.3
2699 Male, age 18, unknown 143.9
2409 Female, age 72, unknown 108.7
2241 Male, age 72, unknown 99.9
2583 Male, age 75, right hemisphere 99.3
1889 Female, age 72, unknown 91.9
2590 Female, age 75, unknown 90.2
1941 Male, age 53, unknown 81.7
Superior colliculus
nTPM: 74.8
2087 Female, age 72, unknown 95.9
2664 Male, age 75, both hemispheres 91.9
1796 Male, age 53, unknown 88.1
2261 Male, age 18, unknown 87.3
2668 Female, age 75, unknown 81.4
1895 Male, age 76, right hemisphere 71.0
1839 Male, age 51, unknown 65.2
2587 Male, age 74, left hemisphere 60.5
1995 Male, age 72, unknown 60.3
1913 Female, age 42, unknown 46.7
Ventral tegmental area
nTPM: 90.9
2410 Female, age 72, unknown 129.2
1915 Female, age 42, unknown 119.7
2218 Male, age 76, both hemispheres 116.1
1942 Male, age 51, unknown 76.1
2223 Female, age 72, unknown 52.6
2021 Male, age 53, unknown 51.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.1
Samples: 139

Max nTPM: 107.7
Min nTPM: 7.4
Std nTPM: 23.6
Median nTPM: 44.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 107.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 103.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 102.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 95.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 94.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 92.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 90.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 88.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 87.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 84.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 83.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.4
FF:10158-103A5 76 years, female 4.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.9
Samples: 4

Max nTPM: 27.6
Min nTPM: 6.7
Sample A Female 22.3
Sample B Female 10.9
Sample C Male 27.6
Sample D Male 6.7
Midbrain
nTPM: 20.4
Samples: 4

Max nTPM: 33.2
Min nTPM: 4.3
Sample A Female 4.3
Sample B Female 11.5
Sample C Male 33.2
Sample D Male 32.7
Periaqueductal gray
nTPM: 11.3
Samples: 3

Max nTPM: 16.0
Min nTPM: 8.5
Sample B Female 8.5
Sample C Male 16.0
Sample D Male 9.4
Superior colliculi
nTPM: 24.1
Samples: 4

Max nTPM: 28.3
Min nTPM: 15.6
Sample A Female 28.3
Sample B Female 15.6
Sample C Male 27.0
Sample D Male 25.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.7
Samples: 4

Max nTPM: 44.1
Min nTPM: 34.9
Sample A Male 44.1
Sample B Male 34.9
Sample C Female 36.5
Sample D Female 39.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
73497059 Antisense, RP_051019_04_B10, Mouse strain C57BL/6J (56 days, male) 2.8

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