HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:46.6 nTPM
HPA Brain:79.2 nTPM
GTEx:46.6 nTPM
FANTOM5:83.0 Scaled Tags Per Million
Pig:50.6 nTPM
Mouse:8.4 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA054058
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 79.2
Sample id Sample description nTPM
Hippocampus
nTPM: 79.2
2621 Female, age 67, right hemisphere 89.8
1911 Female, age 85, right hemisphere 80.8
2529 Female, age 94, left hemisphere 78.9
2148 Female, age 91, left hemisphere 78.6
1855 Male, age 76, left hemisphere 75.7
1898 Male, age 80, left hemisphere 71.4
Dentate gyrus
nTPM: 75.4
2531 Female, age 67, both hemispheres 91.8
2530 Female, age 94, left hemisphere 78.4
1927 Female, age 91, both hemispheres 74.7
2246 Female, age 85, both hemispheres 73.5
2010 Male, age 76, both hemispheres 69.4
2528 Male, age 74, both hemispheres 64.6
Entorhinal gyrus
nTPM: 79.2
2686 Male, age 75, right hemisphere 100.1
2613 Female, age 94, left hemisphere 83.4
2764 Male, age 80, right hemisphere 81.8
1787 Male, age 76, left hemisphere 79.0
2117 Female, age 91, right hemisphere 69.0
1938 Female, age 85, left hemisphere 61.7
Hippocampus, CA1
nTPM: 67.9
2045 Male, age 76, both hemispheres 78.7
2749 Male, age 80, left hemisphere 76.8
1873 Female, age 85, both hemispheres 76.0
2527 Male, age 74, both hemispheres 63.9
2082 Female, age 91, right hemisphere 44.4
Hippocampus, CA2
nTPM: 64.7
1963 Male, age 80, left hemisphere 72.5
1892 Male, age 76, both hemispheres 72.3
2437 Female, age 94, left hemisphere 65.6
2113 Female, age 91, right hemisphere 61.4
1940 Female, age 85, left hemisphere 58.6
2249 Male, age 74, both hemispheres 58.0
Hippocampus, CA3
nTPM: 77.2
2861 Female, age 67, both hemispheres 108.5
2620 Female, age 94, left hemisphere 97.1
2137 Male, age 80, left hemisphere 75.1
1867 Male, age 76, both hemispheres 67.0
1891 Female, age 85, both hemispheres 61.4
2436 Male, age 74, both hemispheres 54.2
Parahippocampal cortex
nTPM: 70.8
2622 Female, age 67, right hemisphere 94.2
2245 Female, age 91, both hemispheres 83.9
2693 Female, age 94, both hemispheres 75.2
2692 Male, age 74, both hemispheres 72.5
2532 Female, age 72, left hemisphere 71.6
1933 Female, age 85, both hemispheres 70.9
2250 Female, age 67, right hemisphere 62.8
1990 Female, age 91, right hemisphere 61.2
2018 Male, age 76, both hemispheres 59.7
1850 Male, age 80, both hemispheres 56.0
Perirhinal gyrus
nTPM: 63.8
2848 Male, age 76, right hemisphere 76.2
1794 Male, age 80, right hemisphere 71.2
2521 Female, age 94, right hemisphere 61.3
1847 Female, age 91, left hemisphere 56.9
1841 Female, age 85, right hemisphere 53.4
Subiculum
nTPM: 67.5
1901 Male, age 80, both hemispheres 75.5
2042 Male, age 76, both hemispheres 74.3
2619 Male, age 74, both hemispheres 71.2
2729 Female, age 91, right hemisphere 70.6
1977 Female, age 85, both hemispheres 58.7
2438 Female, age 94, left hemisphere 54.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 46.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 46.6
Samples: 197

Max nTPM: 93.5
Min nTPM: 12.0
Std nTPM: 14.5
Median nTPM: 44.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 93.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 83.0
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 81.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 80.7
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 79.9
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 79.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 76.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 76.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 76.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 73.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 73.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 83.0
FF:10153-102I9 76 years, female 89.3
FF:10169-103B7 60 years, female 76.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 50.6
Pig sample Sample description nTPM
Subiculum
nTPM: 46.5
Samples: 4

Max nTPM: 62.6
Min nTPM: 38.4
Sample A Female 62.6
Sample B Female 40.6
Sample C Male 44.5
Sample D Male 38.4
Dorsal hippocampus
nTPM: 50.6
Samples: 4

Max nTPM: 65.5
Min nTPM: 45.1
Sample A Female 65.5
Sample B Female 46.4
Sample C Male 45.4
Sample D Male 45.1
Entorhinal cortex
nTPM: 40.4
Samples: 4

Max nTPM: 47.8
Min nTPM: 34.0
Sample A Female 44.4
Sample B Female 35.2
Sample C Male 47.8
Sample D Male 34.0
Ventral hippocampus
nTPM: 50.2
Samples: 4

Max nTPM: 64.3
Min nTPM: 35.5
Sample A Female 45.0
Sample B Female 35.5
Sample C Male 64.3
Sample D Male 56.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 8.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.4
Samples: 4

Max nTPM: 9.0
Min nTPM: 7.0
Sample A Male 7.0
Sample B Male 8.9
Sample C Female 9.0
Sample D Female 8.7
Hippocampal formation
nTPM: 8.4
Samples: 4

Max nTPM: 9.4
Min nTPM: 7.3
Sample A Male 7.3
Sample B Male 8.3
Sample C Female 8.6
Sample D Female 9.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
71488913 Antisense, RP_050825_03_C05, Mouse strain C57BL/6J (56 days, male) 0.1
71212620 Antisense, RP_050816_03_E10, Mouse strain C57BL/6J (56 days, male) 0.0

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