MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.9 nTPM
HPA Brain:80.4 nTPM
GTEx:34.9 nTPM
FANTOM5:78.0 Scaled Tags Per Million
Pig:36.8 nTPM
Mouse:4.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 80.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.2
2586 Male, age 75, left hemisphere 110.8
2828 Female, age 72, unknown 78.4
2666 Male, age 74, left hemisphere 77.8
2219 Male, age 76, both hemispheres 75.0
1833 Male, age 53, unknown 66.0
1870 Female, age 42, unknown 65.7
1827 Male, age 72, unknown 64.9
1830 Male, age 51, unknown 63.8
2411 Female, age 72, unknown 54.9
2019 Male, age 18, unknown 44.6
Dorsal raphe nucleus
nTPM: 63.3
2047 Male, age 72, unknown 72.2
1828 Male, age 53, unknown 63.9
2750 Male, age 76, both hemispheres 61.8
2016 Female, age 72, unknown 60.5
2298 Female, age 72, unknown 58.0
Inferior colliculus
nTPM: 66.5
2849 Male, age 72, unknown 88.3
1890 Male, age 53, unknown 63.0
1848 Female, age 42, unknown 60.7
2097 Female, age 72, unknown 53.9
Median raphe nucleus
nTPM: 71.8
2220 Male, age 76, midline 71.8
Periaquaductal grey, anterior
nTPM: 80.4
1795 Male, age 51, unknown 84.7
1947 Male, age 18, unknown 83.3
2502 Female, age 75, unknown 73.2
Periaquaductal grey, dorsal
nTPM: 69.3
2850 Male, age 76, both hemispheres 77.1
1831 Male, age 72, unknown 68.8
1840 Male, age 53, unknown 66.9
2464 Female, age 72, unknown 64.3
Periaquaductal grey, lateral
nTPM: 63.9
2053 Male, age 18, unknown 68.1
2272 Male, age 74, both hemispheres 62.0
2140 Male, age 76, both hemispheres 61.6
Pretectal area
nTPM: 61.0
2825 Male, age 18, unknown 82.4
2224 Female, age 72, unknown 72.2
2407 Male, age 75, both hemispheres 70.0
2667 Female, age 75, unknown 67.7
2316 Male, age 76, right hemisphere 60.8
2273 Male, age 74, both hemispheres 56.9
1815 Male, age 53, unknown 54.4
1817 Female, age 42, unknown 54.4
1816 Male, age 51, unknown 54.0
2007 Male, age 72, unknown 50.7
1944 Female, age 72, unknown 47.8
Red nucleus
nTPM: 64.5
2584 Male, age 75, left hemisphere 89.0
2588 Male, age 74, left hemisphere 74.1
2769 Male, age 72, unknown 73.5
2227 Male, age 72, unknown 68.4
2503 Female, age 72, unknown 62.7
1904 Male, age 53, unknown 62.0
2725 Female, age 75, unknown 61.6
2823 Male, age 76, right hemisphere 61.1
1954 Female, age 42, unknown 59.6
1865 Male, age 51, unknown 58.1
2785 Male, age 18, unknown 54.5
1821 Female, age 72, unknown 49.0
Substantia nigra
nTPM: 63.2
2583 Male, age 75, right hemisphere 81.0
2665 Male, age 74, both hemispheres 80.9
2699 Male, age 18, unknown 79.9
1916 Female, age 42, unknown 68.3
1941 Male, age 53, unknown 67.0
1851 Male, age 51, unknown 60.6
2590 Female, age 75, unknown 56.2
1889 Female, age 72, unknown 52.7
2241 Male, age 72, unknown 44.3
2409 Female, age 72, unknown 41.1
Superior colliculus
nTPM: 65.8
2664 Male, age 75, both hemispheres 108.2
1839 Male, age 51, unknown 72.4
2668 Female, age 75, unknown 70.9
1796 Male, age 53, unknown 66.5
1913 Female, age 42, unknown 63.6
2587 Male, age 74, left hemisphere 63.6
1995 Male, age 72, unknown 58.5
2261 Male, age 18, unknown 58.4
1895 Male, age 76, right hemisphere 49.1
2087 Female, age 72, unknown 46.9
Ventral tegmental area
nTPM: 66.9
1942 Male, age 51, unknown 74.0
2218 Male, age 76, both hemispheres 73.9
2021 Male, age 53, unknown 73.2
2223 Female, age 72, unknown 69.7
1915 Female, age 42, unknown 62.6
2410 Female, age 72, unknown 47.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.9
Samples: 139

Max nTPM: 62.2
Min nTPM: 13.2
Std nTPM: 8.3
Median nTPM: 33.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 62.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 59.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 55.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 51.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 51.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 51.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 49.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 48.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 48.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 48.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 48.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.0
FF:10158-103A5 76 years, female 78.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.3
Samples: 4

Max nTPM: 43.9
Min nTPM: 27.1
Sample A Female 43.9
Sample B Female 28.4
Sample C Male 37.6
Sample D Male 27.1
Midbrain
nTPM: 36.8
Samples: 4

Max nTPM: 46.2
Min nTPM: 32.9
Sample A Female 46.2
Sample B Female 32.9
Sample C Male 33.5
Sample D Male 34.6
Periaqueductal gray
nTPM: 34.6
Samples: 3

Max nTPM: 40.1
Min nTPM: 30.6
Sample B Female 30.6
Sample C Male 40.1
Sample D Male 33.1
Superior colliculi
nTPM: 32.6
Samples: 4

Max nTPM: 41.5
Min nTPM: 26.5
Sample A Female 41.5
Sample B Female 26.5
Sample C Male 30.0
Sample D Male 32.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.4
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.9
Sample A Male 4.7
Sample B Male 3.9
Sample C Female 4.7
Sample D Female 4.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71212620 Antisense, RP_050816_03_E10, Mouse strain C57BL/6J (56 days, male) 0.1
71488913 Antisense, RP_050825_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0

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