MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:128.0 nTPM
HPA Brain:136.8 nTPM
GTEx:128.0 nTPM
FANTOM5:117.6 Scaled Tags Per Million
Pig:316.7 nTPM
Mouse:456.4 nTPM
Allen mouse:16.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 136.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 106.7
2019 Male, age 18, unknown 151.0
1827 Male, age 72, unknown 124.9
2411 Female, age 72, unknown 123.8
2219 Male, age 76, both hemispheres 105.4
1870 Female, age 42, unknown 97.3
2666 Male, age 74, left hemisphere 97.1
2828 Female, age 72, unknown 95.6
1833 Male, age 53, unknown 93.2
2586 Male, age 75, left hemisphere 92.3
1830 Male, age 51, unknown 86.0
Dorsal raphe nucleus
nTPM: 122.6
2298 Female, age 72, unknown 149.6
2047 Male, age 72, unknown 130.1
1828 Male, age 53, unknown 128.7
2750 Male, age 76, both hemispheres 117.8
2016 Female, age 72, unknown 86.8
Inferior colliculus
nTPM: 115.5
2097 Female, age 72, unknown 148.6
1890 Male, age 53, unknown 124.8
1848 Female, age 42, unknown 103.1
2849 Male, age 72, unknown 85.4
Median raphe nucleus
nTPM: 135.8
2220 Male, age 76, midline 135.8
Periaquaductal grey, anterior
nTPM: 111.1
1947 Male, age 18, unknown 117.9
1795 Male, age 51, unknown 112.6
2502 Female, age 75, unknown 102.6
Periaquaductal grey, dorsal
nTPM: 97.3
1831 Male, age 72, unknown 106.5
2850 Male, age 76, both hemispheres 101.0
1840 Male, age 53, unknown 91.9
2464 Female, age 72, unknown 89.8
Periaquaductal grey, lateral
nTPM: 100.3
2272 Male, age 74, both hemispheres 123.8
2140 Male, age 76, both hemispheres 89.4
2053 Male, age 18, unknown 87.6
Pretectal area
nTPM: 135.8
1816 Male, age 51, unknown 180.1
1817 Female, age 42, unknown 179.8
2007 Male, age 72, unknown 174.8
1944 Female, age 72, unknown 167.6
1815 Male, age 53, unknown 140.7
2667 Female, age 75, unknown 133.6
2273 Male, age 74, both hemispheres 124.0
2224 Female, age 72, unknown 116.5
2407 Male, age 75, both hemispheres 96.6
2825 Male, age 18, unknown 90.5
2316 Male, age 76, right hemisphere 89.9
Red nucleus
nTPM: 120.8
1821 Female, age 72, unknown 171.4
2785 Male, age 18, unknown 135.7
2725 Female, age 75, unknown 132.8
1954 Female, age 42, unknown 131.6
2823 Male, age 76, right hemisphere 123.2
1904 Male, age 53, unknown 119.3
1865 Male, age 51, unknown 118.8
2503 Female, age 72, unknown 107.2
2769 Male, age 72, unknown 105.7
2227 Male, age 72, unknown 105.6
2584 Male, age 75, left hemisphere 99.3
2588 Male, age 74, left hemisphere 99.0
Substantia nigra
nTPM: 136.8
1916 Female, age 42, unknown 178.7
1889 Female, age 72, unknown 165.8
2241 Male, age 72, unknown 159.2
1941 Male, age 53, unknown 150.5
1851 Male, age 51, unknown 146.8
2409 Female, age 72, unknown 129.5
2590 Female, age 75, unknown 121.3
2699 Male, age 18, unknown 109.2
2665 Male, age 74, both hemispheres 104.8
2583 Male, age 75, right hemisphere 101.6
Superior colliculus
nTPM: 104.7
2087 Female, age 72, unknown 142.4
2261 Male, age 18, unknown 119.7
1796 Male, age 53, unknown 114.5
2587 Male, age 74, left hemisphere 109.6
2668 Female, age 75, unknown 109.1
1895 Male, age 76, right hemisphere 105.4
1839 Male, age 51, unknown 93.4
1913 Female, age 42, unknown 89.4
2664 Male, age 75, both hemispheres 84.5
1995 Male, age 72, unknown 78.5
Ventral tegmental area
nTPM: 124.0
2410 Female, age 72, unknown 156.9
2218 Male, age 76, both hemispheres 145.7
1915 Female, age 42, unknown 136.6
1942 Male, age 51, unknown 108.4
2223 Female, age 72, unknown 103.7
2021 Male, age 53, unknown 92.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 128.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 128.0
Samples: 139

Max nTPM: 319.6
Min nTPM: 56.9
Std nTPM: 45.4
Median nTPM: 114.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 319.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 292.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 260.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 255.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 224.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 215.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 212.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 206.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 202.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 200.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 198.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 117.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.6
FF:10158-103A5 76 years, female 117.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 316.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 220.3
Samples: 4

Max nTPM: 310.0
Min nTPM: 121.8
Sample A Female 310.0
Sample B Female 172.3
Sample C Male 276.9
Sample D Male 121.8
Midbrain
nTPM: 255.0
Samples: 4

Max nTPM: 401.1
Min nTPM: 154.4
Sample A Female 154.4
Sample B Female 184.3
Sample C Male 401.1
Sample D Male 280.0
Periaqueductal gray
nTPM: 174.2
Samples: 3

Max nTPM: 202.7
Min nTPM: 144.5
Sample B Female 175.3
Sample C Male 202.7
Sample D Male 144.5
Superior colliculi
nTPM: 316.7
Samples: 4

Max nTPM: 458.7
Min nTPM: 229.4
Sample A Female 313.3
Sample B Female 229.4
Sample C Male 458.7
Sample D Male 265.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 456.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 456.4
Samples: 4

Max nTPM: 463.2
Min nTPM: 449.7
Sample A Male 454.9
Sample B Male 463.2
Sample C Female 457.9
Sample D Female 449.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.1
70194916 Antisense, RP_050517_02_A06, Mouse strain C57BL/6J (56 days, male) 17.6
70918898 Antisense, RP_050712_04_G03, Mouse strain C57BL/6J (56 days, male) 16.5
74957912 Antisense, RP_060315_05_A09, Mouse strain C57BL/6J (56 days, male) 14.4

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