MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:118.6 nTPM
HPA Brain:37.2 nTPM
GTEx:118.6 nTPM
FANTOM5:57.4 Scaled Tags Per Million
Pig:132.2 nTPM
Mouse:181.3 nTPM
Allen mouse:11.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.1
2019 Male, age 18, unknown 48.2
2411 Female, age 72, unknown 34.9
2828 Female, age 72, unknown 33.8
1827 Male, age 72, unknown 33.6
2586 Male, age 75, left hemisphere 31.8
1870 Female, age 42, unknown 27.1
1833 Male, age 53, unknown 26.6
2219 Male, age 76, both hemispheres 26.3
2666 Male, age 74, left hemisphere 25.0
1830 Male, age 51, unknown 23.5
Dorsal raphe nucleus
nTPM: 35.0
2298 Female, age 72, unknown 47.7
1828 Male, age 53, unknown 38.8
2047 Male, age 72, unknown 32.3
2016 Female, age 72, unknown 29.2
2750 Male, age 76, both hemispheres 27.2
Inferior colliculus
nTPM: 34.0
2097 Female, age 72, unknown 44.9
1890 Male, age 53, unknown 36.0
1848 Female, age 42, unknown 31.3
2849 Male, age 72, unknown 23.8
Median raphe nucleus
nTPM: 24.3
2220 Male, age 76, midline 24.3
Periaquaductal grey, anterior
nTPM: 32.3
1795 Male, age 51, unknown 35.3
2502 Female, age 75, unknown 32.6
1947 Male, age 18, unknown 29.0
Periaquaductal grey, dorsal
nTPM: 25.8
1840 Male, age 53, unknown 27.8
2464 Female, age 72, unknown 27.5
1831 Male, age 72, unknown 24.2
2850 Male, age 76, both hemispheres 23.6
Periaquaductal grey, lateral
nTPM: 28.9
2272 Male, age 74, both hemispheres 37.5
2140 Male, age 76, both hemispheres 25.9
2053 Male, age 18, unknown 23.4
Pretectal area
nTPM: 37.2
1817 Female, age 42, unknown 51.9
2007 Male, age 72, unknown 50.0
1816 Male, age 51, unknown 45.6
2273 Male, age 74, both hemispheres 41.5
1815 Male, age 53, unknown 39.1
1944 Female, age 72, unknown 38.8
2667 Female, age 75, unknown 36.8
2224 Female, age 72, unknown 31.2
2316 Male, age 76, right hemisphere 26.9
2825 Male, age 18, unknown 24.4
2407 Male, age 75, both hemispheres 22.8
Red nucleus
nTPM: 34.2
2725 Female, age 75, unknown 42.6
1821 Female, age 72, unknown 42.2
2785 Male, age 18, unknown 42.0
2503 Female, age 72, unknown 40.9
2769 Male, age 72, unknown 34.9
2823 Male, age 76, right hemisphere 33.5
2227 Male, age 72, unknown 33.3
1954 Female, age 42, unknown 32.5
1865 Male, age 51, unknown 31.3
2588 Male, age 74, left hemisphere 30.0
1904 Male, age 53, unknown 29.0
2584 Male, age 75, left hemisphere 17.8
Substantia nigra
nTPM: 33.8
1916 Female, age 42, unknown 42.7
1889 Female, age 72, unknown 40.4
2241 Male, age 72, unknown 38.3
1851 Male, age 51, unknown 37.7
2409 Female, age 72, unknown 34.2
2665 Male, age 74, both hemispheres 33.7
1941 Male, age 53, unknown 33.1
2699 Male, age 18, unknown 28.3
2583 Male, age 75, right hemisphere 25.2
2590 Female, age 75, unknown 24.9
Superior colliculus
nTPM: 31.2
2087 Female, age 72, unknown 39.4
1796 Male, age 53, unknown 36.4
2261 Male, age 18, unknown 35.9
2587 Male, age 74, left hemisphere 35.2
1895 Male, age 76, right hemisphere 32.2
2668 Female, age 75, unknown 31.2
1839 Male, age 51, unknown 26.8
1995 Male, age 72, unknown 26.1
1913 Female, age 42, unknown 25.8
2664 Male, age 75, both hemispheres 23.5
Ventral tegmental area
nTPM: 31.5
2410 Female, age 72, unknown 41.2
1915 Female, age 42, unknown 35.4
1942 Male, age 51, unknown 31.2
2218 Male, age 76, both hemispheres 29.9
2223 Female, age 72, unknown 27.1
2021 Male, age 53, unknown 24.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 118.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 118.6
Samples: 139

Max nTPM: 196.2
Min nTPM: 47.0
Std nTPM: 31.7
Median nTPM: 114.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 196.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 188.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 188.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 187.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 184.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 182.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 180.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 174.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 173.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 170.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 170.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.4
FF:10158-103A5 76 years, female 57.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 132.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 98.3
Samples: 4

Max nTPM: 135.8
Min nTPM: 76.9
Sample A Female 135.8
Sample B Female 76.9
Sample C Male 94.9
Sample D Male 85.7
Midbrain
nTPM: 108.6
Samples: 4

Max nTPM: 125.3
Min nTPM: 96.9
Sample A Female 105.7
Sample B Female 96.9
Sample C Male 125.3
Sample D Male 106.3
Periaqueductal gray
nTPM: 84.8
Samples: 3

Max nTPM: 93.8
Min nTPM: 75.6
Sample B Female 84.9
Sample C Male 93.8
Sample D Male 75.6
Superior colliculi
nTPM: 132.2
Samples: 4

Max nTPM: 164.2
Min nTPM: 99.7
Sample A Female 158.9
Sample B Female 99.7
Sample C Male 164.2
Sample D Male 105.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 181.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 181.4
Samples: 4

Max nTPM: 192.4
Min nTPM: 167.8
Sample A Male 190.7
Sample B Male 174.5
Sample C Female 167.8
Sample D Female 192.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.7
67767465 Antisense, RP_040916_02_B04, Mouse strain C57BL/6J (56 days, male) 11.7

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