BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA Brain:47.4 nTPM
GTEx:19.2 nTPM
FANTOM5:40.0 Scaled Tags Per Million
Pig:19.2 nTPM
Mouse:42.7 nTPM
Allen mouse:0.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 47.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.7
2481 Female, age 94, left hemisphere 56.4
1857 Female, age 85, left hemisphere 41.7
2290 Female, age 72, unknown 41.1
1854 Male, age 80, left hemisphere 40.5
2288 Male, age 75, left hemisphere 38.5
2289 Male, age 61, right hemisphere 36.6
2846 Female, age 79, unknown 33.2
1781 Male, age 74, unknown 29.7
Globus pallidus, externus
nTPM: 42.2
1996 Male, age 80, right hemisphere 47.8
2646 Male, age 61, right hemisphere 47.6
2772 Female, age 79, unknown 43.2
2395 Male, age 75, both hemispheres 39.5
2567 Female, age 72, unknown 33.1
Globus pallidus, internus
nTPM: 47.4
2483 Female, age 94, right hemisphere 68.8
2037 Male, age 80, right hemisphere 51.8
1818 Male, age 74, unknown 50.0
2778 Female, age 91, both hemispheres 47.6
2111 Female, age 85, right hemisphere 42.4
2287 Male, age 75, right hemisphere 38.3
2566 Female, age 72, unknown 33.1
Nucleus accumbens
nTPM: 37.9
2286 Male, age 75, left hemisphere 43.6
2824 Male, age 61, right hemisphere 42.7
1806 Female, age 85, left hemisphere 42.2
2732 Male, age 80, right hemisphere 37.3
2391 Female, age 94, left hemisphere 37.1
2698 Female, age 72, unknown 37.1
1856 Female, age 91, right hemisphere 33.1
1783 Male, age 74, unknown 30.4
Nucleus basalis of Meynert
nTPM: 39.2
2569 Male, age 61, both hemispheres 52.3
2393 Male, age 80, right hemisphere 40.0
2821 Male, age 75, both hemispheres 33.7
2484 Female, age 94, left hemisphere 30.9
Nucleus of the diagonal band
nTPM: 28.6
1979 Male, age 74, unknown 29.8
1812 Female, age 91, both hemispheres 29.5
2029 Male, age 61, right hemisphere 28.9
2775 Male, age 80, right hemisphere 28.6
2195 Female, age 85, both hemispheres 26.1
Putamen
nTPM: 33.8
2482 Female, age 94, left hemisphere 41.1
1838 Male, age 80, right hemisphere 35.6
1937 Female, age 91, right hemisphere 34.0
1829 Male, age 74, unknown 33.6
2489 Female, age 72, unknown 32.1
2466 Female, age 79, unknown 30.4
2647 Male, age 75, left hemisphere 30.3
Septal nuclei
nTPM: 30.5
2199 Male, age 80, right hemisphere 41.7
2394 Male, age 61, left hemisphere 35.5
2059 Female, age 85, both hemispheres 29.8
2031 Female, age 72, unknown 28.1
2009 Female, age 91, both hemispheres 27.9
1960 Male, age 74, unknown 26.3
2629 Female, age 94, right hemisphere 24.5
Stria terminalis, bed nucleus
nTPM: 29.5
2201 Male, age 74, unknown 37.0
2486 Female, age 94, both hemispheres 26.2
1974 Female, age 91, both hemispheres 25.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 19.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.1
Samples: 246

Max nTPM: 39.0
Min nTPM: 7.2
Std nTPM: 6.2
Median nTPM: 18.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 39.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 37.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 37.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 37.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 36.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 34.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 33.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 33.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 33.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 33.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 32.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.7
Samples: 246

Max nTPM: 34.0
Min nTPM: 6.9
Std nTPM: 5.4
Median nTPM: 15.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 34.0
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 33.9
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 32.7
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 32.3
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 32.0
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 31.2
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 30.7
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 30.2
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 29.4
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 29.1
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 28.6
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Brain - Putamen (basal ganglia)
Average nTPM: 19.2
Samples: 205

Max nTPM: 39.8
Min nTPM: 7.6
Std nTPM: 6.2
Median nTPM: 18.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 39.8
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 36.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 36.1
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 34.7
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 34.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 32.0
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 31.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 31.2
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 31.1
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 30.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 30.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 29.3
FF:10164-103B2 76 years, female 29.3
Nucleus accumbens
Scaled Tags Per Million: 29.1
FF:10037-101F1 23-56 years, mixed 29.1
Putamen
Scaled Tags Per Million: 28.5
FF:10176-103C5 60 years, female 28.5
Globus pallidus
Scaled Tags Per Million: 40.0
FF:10175-103C4 60 years, female 49.4
FF:10161-103A8 76 years, female 30.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 19.2
Pig sample Sample description nTPM
Caudate
nTPM: 14.2
Samples: 4

Max nTPM: 15.3
Min nTPM: 12.5
Sample A Female 13.8
Sample B Female 15.3
Sample C Male 15.2
Sample D Male 12.5
Putamen
nTPM: 19.2
Samples: 4

Max nTPM: 24.5
Min nTPM: 14.6
Sample A Female 24.5
Sample B Female 14.6
Sample C Male 18.5
Sample D Male 19.3
Septum
nTPM: 18.9
Samples: 4

Max nTPM: 22.6
Min nTPM: 16.3
Sample A Female 18.1
Sample B Female 16.3
Sample C Male 22.6
Sample D Male 18.5
Ventral pallidum
nTPM: 17.3
Samples: 4

Max nTPM: 21.3
Min nTPM: 11.5
Sample A Female 11.5
Sample B Female 18.3
Sample C Male 18.2
Sample D Male 21.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 42.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 42.7
Samples: 4

Max nTPM: 46.3
Min nTPM: 39.6
Sample A Male 43.0
Sample B Male 39.6
Sample C Female 46.3
Sample D Female 42.0
Septum
nTPM: 38.4
Samples: 4

Max nTPM: 41.1
Min nTPM: 32.7
Sample A Male 32.7
Sample B Male 39.8
Sample C Female 39.9
Sample D Female 41.1
Ventral forebrain
nTPM: 37.8
Samples: 4

Max nTPM: 43.9
Min nTPM: 34.3
Sample A Male 34.3
Sample B Male 36.0
Sample C Female 43.9
Sample D Female 37.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
75774627 Antisense, RP_060530_01_A03, Mouse strain C57BL/6J (56 days, male) 0.8
75773649 Antisense, RP_060530_01_A03, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.7
75774627 Antisense, RP_060530_01_A03, Mouse strain C57BL/6J (56 days, male) 0.7
75773649 Antisense, RP_060530_01_A03, Mouse strain C57BL/6J (56 days, male) 0.5

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