MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.0 nTPM
HPA Brain:46.4 nTPM
GTEx:24.0 nTPM
FANTOM5:39.4 Scaled Tags Per Million
Pig:29.2 nTPM
Mouse:36.7 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.4
2828 Female, age 72, unknown 46.9
1870 Female, age 42, unknown 44.2
2411 Female, age 72, unknown 43.1
1833 Male, age 53, unknown 42.8
2019 Male, age 18, unknown 39.6
1830 Male, age 51, unknown 37.7
2586 Male, age 75, left hemisphere 37.2
1827 Male, age 72, unknown 35.7
2666 Male, age 74, left hemisphere 34.2
2219 Male, age 76, both hemispheres 33.1
Dorsal raphe nucleus
nTPM: 43.1
2016 Female, age 72, unknown 46.0
1828 Male, age 53, unknown 44.7
2298 Female, age 72, unknown 44.3
2047 Male, age 72, unknown 40.7
2750 Male, age 76, both hemispheres 39.6
Inferior colliculus
nTPM: 45.2
1848 Female, age 42, unknown 47.6
2097 Female, age 72, unknown 47.3
1890 Male, age 53, unknown 47.1
2849 Male, age 72, unknown 39.0
Median raphe nucleus
nTPM: 41.4
2220 Male, age 76, midline 41.4
Periaquaductal grey, anterior
nTPM: 35.0
2502 Female, age 75, unknown 37.6
1947 Male, age 18, unknown 34.8
1795 Male, age 51, unknown 32.5
Periaquaductal grey, dorsal
nTPM: 44.6
1840 Male, age 53, unknown 49.4
2464 Female, age 72, unknown 45.4
2850 Male, age 76, both hemispheres 44.5
1831 Male, age 72, unknown 39.4
Periaquaductal grey, lateral
nTPM: 43.0
2140 Male, age 76, both hemispheres 49.1
2053 Male, age 18, unknown 41.9
2272 Male, age 74, both hemispheres 37.9
Pretectal area
nTPM: 39.0
2667 Female, age 75, unknown 44.6
2224 Female, age 72, unknown 43.8
2316 Male, age 76, right hemisphere 42.2
2825 Male, age 18, unknown 41.1
2273 Male, age 74, both hemispheres 40.1
1817 Female, age 42, unknown 39.1
1816 Male, age 51, unknown 38.5
1944 Female, age 72, unknown 38.4
1815 Male, age 53, unknown 38.0
2007 Male, age 72, unknown 33.0
2407 Male, age 75, both hemispheres 29.6
Red nucleus
nTPM: 44.5
1821 Female, age 72, unknown 59.6
1954 Female, age 42, unknown 53.2
2769 Male, age 72, unknown 51.8
2227 Male, age 72, unknown 50.6
1904 Male, age 53, unknown 47.1
2503 Female, age 72, unknown 47.1
2823 Male, age 76, right hemisphere 45.8
1865 Male, age 51, unknown 44.7
2725 Female, age 75, unknown 38.3
2588 Male, age 74, left hemisphere 38.0
2785 Male, age 18, unknown 31.5
2584 Male, age 75, left hemisphere 26.7
Substantia nigra
nTPM: 46.4
2699 Male, age 18, unknown 61.7
2409 Female, age 72, unknown 59.2
2241 Male, age 72, unknown 52.5
1916 Female, age 42, unknown 50.5
1851 Male, age 51, unknown 48.7
2665 Male, age 74, both hemispheres 43.3
2590 Female, age 75, unknown 41.8
1889 Female, age 72, unknown 37.7
1941 Male, age 53, unknown 34.6
2583 Male, age 75, right hemisphere 34.0
Superior colliculus
nTPM: 39.1
1995 Male, age 72, unknown 43.4
1913 Female, age 42, unknown 43.0
2087 Female, age 72, unknown 41.2
2587 Male, age 74, left hemisphere 40.5
1839 Male, age 51, unknown 39.9
2668 Female, age 75, unknown 38.8
2261 Male, age 18, unknown 37.8
1895 Male, age 76, right hemisphere 36.8
1796 Male, age 53, unknown 35.9
2664 Male, age 75, both hemispheres 33.6
Ventral tegmental area
nTPM: 44.1
2410 Female, age 72, unknown 46.4
2021 Male, age 53, unknown 45.0
1942 Male, age 51, unknown 44.1
1915 Female, age 42, unknown 43.0
2218 Male, age 76, both hemispheres 43.0
2223 Female, age 72, unknown 42.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.0
Samples: 139

Max nTPM: 69.9
Min nTPM: 6.3
Std nTPM: 9.6
Median nTPM: 22.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 69.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 66.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 49.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 48.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 46.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 46.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 46.1
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 40.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 40.1
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 37.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 36.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.4
FF:10158-103A5 76 years, female 39.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.2
Samples: 4

Max nTPM: 31.8
Min nTPM: 24.8
Sample A Female 30.6
Sample B Female 31.8
Sample C Male 24.8
Sample D Male 29.7
Midbrain
nTPM: 26.2
Samples: 4

Max nTPM: 42.4
Min nTPM: 16.5
Sample A Female 42.4
Sample B Female 26.8
Sample C Male 19.2
Sample D Male 16.5
Periaqueductal gray
nTPM: 22.4
Samples: 3

Max nTPM: 23.4
Min nTPM: 21.7
Sample B Female 23.4
Sample C Male 21.7
Sample D Male 22.1
Superior colliculi
nTPM: 27.0
Samples: 4

Max nTPM: 33.8
Min nTPM: 20.7
Sample A Female 30.1
Sample B Female 33.8
Sample C Male 20.7
Sample D Male 23.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.7
Samples: 4

Max nTPM: 37.0
Min nTPM: 36.2
Sample A Male 36.2
Sample B Male 36.9
Sample C Female 37.0
Sample D Female 36.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
75773649 Antisense, RP_060530_01_A03, Mouse strain C57BL/6J (56 days, male) 0.5
75774627 Antisense, RP_060530_01_A03, Mouse strain C57BL/6J (56 days, male) 0.5

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