HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.3 nTPM
HPA Brain:70.2 nTPM
GTEx:24.3 nTPM
FANTOM5:48.9 Scaled Tags Per Million
Pig:17.1 nTPM
Mouse:40.4 nTPM
Allen mouse:3.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 70.2
Sample id Sample description nTPM
Hippocampus
nTPM: 53.2
2621 Female, age 67, right hemisphere 64.2
1898 Male, age 80, left hemisphere 61.7
2148 Female, age 91, left hemisphere 50.0
1855 Male, age 76, left hemisphere 49.6
2529 Female, age 94, left hemisphere 49.2
1911 Female, age 85, right hemisphere 44.7
Dentate gyrus
nTPM: 56.8
2531 Female, age 67, both hemispheres 69.1
2530 Female, age 94, left hemisphere 57.9
1927 Female, age 91, both hemispheres 57.2
2010 Male, age 76, both hemispheres 53.8
2528 Male, age 74, both hemispheres 51.5
2246 Female, age 85, both hemispheres 51.1
Entorhinal gyrus
nTPM: 69.5
2613 Female, age 94, left hemisphere 85.5
2764 Male, age 80, right hemisphere 80.4
2686 Male, age 75, right hemisphere 70.3
1938 Female, age 85, left hemisphere 69.1
1787 Male, age 76, left hemisphere 63.8
2117 Female, age 91, right hemisphere 48.2
Hippocampus, CA1
nTPM: 55.4
2749 Male, age 80, left hemisphere 68.9
2082 Female, age 91, right hemisphere 55.9
2045 Male, age 76, both hemispheres 51.9
1873 Female, age 85, both hemispheres 50.8
2527 Male, age 74, both hemispheres 49.7
Hippocampus, CA2
nTPM: 54.1
2437 Female, age 94, left hemisphere 66.2
1892 Male, age 76, both hemispheres 56.1
2113 Female, age 91, right hemisphere 53.9
1940 Female, age 85, left hemisphere 50.7
1963 Male, age 80, left hemisphere 50.2
2249 Male, age 74, both hemispheres 47.6
Hippocampus, CA3
nTPM: 61.8
2620 Female, age 94, left hemisphere 85.7
2861 Female, age 67, both hemispheres 70.2
2137 Male, age 80, left hemisphere 66.2
1867 Male, age 76, both hemispheres 53.2
1891 Female, age 85, both hemispheres 50.1
2436 Male, age 74, both hemispheres 45.2
Parahippocampal cortex
nTPM: 65.7
2693 Female, age 94, both hemispheres 83.3
1850 Male, age 80, both hemispheres 71.6
2622 Female, age 67, right hemisphere 70.4
2245 Female, age 91, both hemispheres 65.1
1990 Female, age 91, right hemisphere 64.3
2532 Female, age 72, left hemisphere 63.2
2692 Male, age 74, both hemispheres 62.8
2018 Male, age 76, both hemispheres 60.6
1933 Female, age 85, both hemispheres 59.8
2250 Female, age 67, right hemisphere 55.9
Perirhinal gyrus
nTPM: 70.2
1794 Male, age 80, right hemisphere 82.3
1847 Female, age 91, left hemisphere 73.0
1841 Female, age 85, right hemisphere 69.3
2848 Male, age 76, right hemisphere 66.2
2521 Female, age 94, right hemisphere 59.9
Subiculum
nTPM: 58.8
2438 Female, age 94, left hemisphere 77.0
1901 Male, age 80, both hemispheres 58.6
1977 Female, age 85, both hemispheres 58.1
2619 Male, age 74, both hemispheres 58.0
2729 Female, age 91, right hemisphere 52.5
2042 Male, age 76, both hemispheres 48.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 24.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 24.3
Samples: 197

Max nTPM: 51.2
Min nTPM: 11.1
Std nTPM: 7.9
Median nTPM: 22.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 51.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 44.8
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 44.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 44.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 44.5
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 42.7
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 42.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 42.2
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 41.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 41.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 40.0
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 48.9
FF:10169-103B7 60 years, female 54.0
FF:10153-102I9 76 years, female 43.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 17.1
Pig sample Sample description nTPM
Subiculum
nTPM: 12.9
Samples: 4

Max nTPM: 14.8
Min nTPM: 11.3
Sample A Female 14.8
Sample B Female 11.6
Sample C Male 13.8
Sample D Male 11.3
Dorsal hippocampus
nTPM: 17.1
Samples: 4

Max nTPM: 19.6
Min nTPM: 14.3
Sample A Female 19.6
Sample B Female 17.7
Sample C Male 14.3
Sample D Male 16.9
Entorhinal cortex
nTPM: 14.4
Samples: 4

Max nTPM: 15.9
Min nTPM: 13.4
Sample A Female 15.9
Sample B Female 14.0
Sample C Male 13.4
Sample D Male 14.1
Ventral hippocampus
nTPM: 15.6
Samples: 4

Max nTPM: 18.8
Min nTPM: 12.0
Sample A Female 15.2
Sample B Female 12.0
Sample C Male 16.4
Sample D Male 18.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 40.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 35.8
Samples: 4

Max nTPM: 38.8
Min nTPM: 33.4
Sample A Male 35.0
Sample B Male 33.4
Sample C Female 36.1
Sample D Female 38.8
Hippocampal formation
nTPM: 40.4
Samples: 4

Max nTPM: 43.2
Min nTPM: 36.1
Sample A Male 36.1
Sample B Male 43.2
Sample C Female 41.6
Sample D Female 40.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
69782079 Antisense, RP_050505_02_C07, Mouse strain C57BL/6J (56 days, male) 3.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org