MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA Brain:51.7 nTPM
GTEx:19.2 nTPM
FANTOM5:42.0 Scaled Tags Per Million
Pig:13.7 nTPM
Mouse:34.7 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.9
2586 Male, age 75, left hemisphere 59.7
2666 Male, age 74, left hemisphere 53.5
1827 Male, age 72, unknown 53.2
2411 Female, age 72, unknown 52.1
1870 Female, age 42, unknown 48.1
2828 Female, age 72, unknown 46.8
1830 Male, age 51, unknown 46.2
2019 Male, age 18, unknown 46.0
1833 Male, age 53, unknown 43.1
2219 Male, age 76, both hemispheres 40.7
Dorsal raphe nucleus
nTPM: 45.3
2047 Male, age 72, unknown 52.8
2298 Female, age 72, unknown 46.9
1828 Male, age 53, unknown 44.3
2750 Male, age 76, both hemispheres 41.5
2016 Female, age 72, unknown 40.8
Inferior colliculus
nTPM: 50.0
2849 Male, age 72, unknown 52.5
1848 Female, age 42, unknown 51.6
2097 Female, age 72, unknown 48.8
1890 Male, age 53, unknown 47.1
Median raphe nucleus
nTPM: 44.6
2220 Male, age 76, midline 44.6
Periaquaductal grey, anterior
nTPM: 51.7
1947 Male, age 18, unknown 53.6
2502 Female, age 75, unknown 52.7
1795 Male, age 51, unknown 48.8
Periaquaductal grey, dorsal
nTPM: 43.9
1840 Male, age 53, unknown 48.5
2464 Female, age 72, unknown 46.8
1831 Male, age 72, unknown 42.0
2850 Male, age 76, both hemispheres 38.1
Periaquaductal grey, lateral
nTPM: 39.5
2053 Male, age 18, unknown 43.7
2140 Male, age 76, both hemispheres 38.6
2272 Male, age 74, both hemispheres 36.3
Pretectal area
nTPM: 49.2
1816 Male, age 51, unknown 61.1
2667 Female, age 75, unknown 56.1
2007 Male, age 72, unknown 52.7
1944 Female, age 72, unknown 51.8
2825 Male, age 18, unknown 51.4
1817 Female, age 42, unknown 51.1
2224 Female, age 72, unknown 48.9
2407 Male, age 75, both hemispheres 46.3
2316 Male, age 76, right hemisphere 44.0
1815 Male, age 53, unknown 43.6
2273 Male, age 74, both hemispheres 34.5
Red nucleus
nTPM: 45.5
2588 Male, age 74, left hemisphere 60.3
2584 Male, age 75, left hemisphere 54.8
2823 Male, age 76, right hemisphere 48.4
2769 Male, age 72, unknown 48.0
1821 Female, age 72, unknown 45.3
2785 Male, age 18, unknown 44.6
2227 Male, age 72, unknown 44.5
1954 Female, age 42, unknown 43.9
2503 Female, age 72, unknown 41.1
2725 Female, age 75, unknown 40.1
1904 Male, age 53, unknown 38.0
1865 Male, age 51, unknown 37.3
Substantia nigra
nTPM: 40.8
1941 Male, age 53, unknown 51.2
1889 Female, age 72, unknown 47.0
2665 Male, age 74, both hemispheres 45.5
2583 Male, age 75, right hemisphere 45.2
2590 Female, age 75, unknown 40.5
1851 Male, age 51, unknown 39.1
1916 Female, age 42, unknown 38.7
2241 Male, age 72, unknown 36.6
2699 Male, age 18, unknown 33.2
2409 Female, age 72, unknown 30.8
Superior colliculus
nTPM: 48.5
2664 Male, age 75, both hemispheres 56.4
2087 Female, age 72, unknown 52.3
1796 Male, age 53, unknown 52.1
2261 Male, age 18, unknown 51.6
1839 Male, age 51, unknown 51.1
1895 Male, age 76, right hemisphere 48.0
2587 Male, age 74, left hemisphere 47.7
2668 Female, age 75, unknown 46.0
1913 Female, age 42, unknown 44.2
1995 Male, age 72, unknown 36.0
Ventral tegmental area
nTPM: 42.2
2021 Male, age 53, unknown 44.7
1942 Male, age 51, unknown 44.1
2410 Female, age 72, unknown 43.4
1915 Female, age 42, unknown 41.6
2223 Female, age 72, unknown 41.4
2218 Male, age 76, both hemispheres 38.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.2
Samples: 139

Max nTPM: 53.6
Min nTPM: 9.7
Std nTPM: 5.7
Median nTPM: 18.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 53.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 37.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 34.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 32.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 31.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 30.0
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 28.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 27.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 27.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 27.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 27.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.0
FF:10158-103A5 76 years, female 42.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.2
Samples: 4

Max nTPM: 13.3
Min nTPM: 9.1
Sample A Female 13.3
Sample B Female 9.5
Sample C Male 13.0
Sample D Male 9.1
Midbrain
nTPM: 13.5
Samples: 4

Max nTPM: 18.5
Min nTPM: 9.7
Sample A Female 9.7
Sample B Female 11.1
Sample C Male 18.5
Sample D Male 14.7
Periaqueductal gray
nTPM: 11.9
Samples: 3

Max nTPM: 13.6
Min nTPM: 10.9
Sample B Female 11.2
Sample C Male 13.6
Sample D Male 10.9
Superior colliculi
nTPM: 13.7
Samples: 4

Max nTPM: 16.6
Min nTPM: 8.2
Sample A Female 15.9
Sample B Female 8.2
Sample C Male 16.6
Sample D Male 14.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.7
Samples: 4

Max nTPM: 35.7
Min nTPM: 33.2
Sample A Male 35.0
Sample B Male 34.7
Sample C Female 33.2
Sample D Female 35.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
69782079 Antisense, RP_050505_02_C07, Mouse strain C57BL/6J (56 days, male) 2.1

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