BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:22.4 nTPM
HPA Brain:29.6 nTPM
GTEx:22.4 nTPM
FANTOM5:99.9 Scaled Tags Per Million
Pig:90.8 nTPM
Mouse:101.3 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA043127
Glial cells Low
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 29.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 22.2
2481 Female, age 94, left hemisphere 34.8
2290 Female, age 72, unknown 23.5
1857 Female, age 85, left hemisphere 21.6
1854 Male, age 80, left hemisphere 20.5
2288 Male, age 75, left hemisphere 20.1
2846 Female, age 79, unknown 19.9
2289 Male, age 61, right hemisphere 19.3
1781 Male, age 74, unknown 17.8
Globus pallidus, externus
nTPM: 29.6
2646 Male, age 61, right hemisphere 31.5
2772 Female, age 79, unknown 31.2
1996 Male, age 80, right hemisphere 30.7
2567 Female, age 72, unknown 28.0
2395 Male, age 75, both hemispheres 26.6
Globus pallidus, internus
nTPM: 28.9
2483 Female, age 94, right hemisphere 42.3
2111 Female, age 85, right hemisphere 30.2
2778 Female, age 91, both hemispheres 27.9
2287 Male, age 75, right hemisphere 26.3
1818 Male, age 74, unknown 26.1
2037 Male, age 80, right hemisphere 25.8
2566 Female, age 72, unknown 23.8
Nucleus accumbens
nTPM: 22.6
2391 Female, age 94, left hemisphere 25.5
2286 Male, age 75, left hemisphere 24.7
2824 Male, age 61, right hemisphere 24.3
1806 Female, age 85, left hemisphere 23.0
2698 Female, age 72, unknown 21.1
1783 Male, age 74, unknown 20.9
1856 Female, age 91, right hemisphere 20.8
2732 Male, age 80, right hemisphere 20.7
Nucleus basalis of Meynert
nTPM: 25.0
2569 Male, age 61, both hemispheres 32.4
2393 Male, age 80, right hemisphere 27.1
2821 Male, age 75, both hemispheres 21.6
2484 Female, age 94, left hemisphere 19.0
Nucleus of the diagonal band
nTPM: 20.3
2775 Male, age 80, right hemisphere 22.6
1812 Female, age 91, both hemispheres 21.8
2029 Male, age 61, right hemisphere 20.4
1979 Male, age 74, unknown 18.8
2195 Female, age 85, both hemispheres 18.1
Putamen
nTPM: 22.9
2482 Female, age 94, left hemisphere 33.7
2647 Male, age 75, left hemisphere 23.0
1829 Male, age 74, unknown 22.8
1937 Female, age 91, right hemisphere 21.7
2466 Female, age 79, unknown 21.0
2489 Female, age 72, unknown 19.3
1838 Male, age 80, right hemisphere 19.0
Septal nuclei
nTPM: 21.2
2059 Female, age 85, both hemispheres 24.0
1960 Male, age 74, unknown 21.8
2199 Male, age 80, right hemisphere 21.2
2629 Female, age 94, right hemisphere 20.9
2031 Female, age 72, unknown 20.7
2394 Male, age 61, left hemisphere 20.0
2009 Female, age 91, both hemispheres 19.5
Stria terminalis, bed nucleus
nTPM: 18.4
1974 Female, age 91, both hemispheres 19.0
2486 Female, age 94, both hemispheres 18.2
2201 Male, age 74, unknown 17.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 22.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.4
Samples: 246

Max nTPM: 53.2
Min nTPM: 8.1
Std nTPM: 6.9
Median nTPM: 19.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 53.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 40.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 40.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 39.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 39.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 38.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 38.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 37.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 36.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 36.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 36.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 20.3
Samples: 246

Max nTPM: 49.7
Min nTPM: 7.2
Std nTPM: 7.5
Median nTPM: 18.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 49.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 47.9
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 46.1
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 43.8
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 43.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 42.2
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 41.4
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 37.8
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 37.7
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 37.5
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 37.4
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Brain - Putamen (basal ganglia)
Average nTPM: 22.4
Samples: 205

Max nTPM: 62.0
Min nTPM: 6.9
Std nTPM: 8.6
Median nTPM: 20.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 62.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 51.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 50.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 50.7
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 44.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 43.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 41.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 40.5
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 40.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 38.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 37.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 99.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 76.5
FF:10164-103B2 76 years, female 76.5
Nucleus accumbens
Scaled Tags Per Million: 99.9
FF:10037-101F1 23-56 years, mixed 99.9
Putamen
Scaled Tags Per Million: 77.9
FF:10176-103C5 60 years, female 77.9
Globus pallidus
Scaled Tags Per Million: 73.1
FF:10175-103C4 60 years, female 90.2
FF:10161-103A8 76 years, female 55.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 90.8
Pig sample Sample description nTPM
Caudate
nTPM: 65.2
Samples: 4

Max nTPM: 79.2
Min nTPM: 52.4
Sample A Female 67.4
Sample B Female 52.4
Sample C Male 79.2
Sample D Male 61.6
Putamen
nTPM: 90.8
Samples: 4

Max nTPM: 114.3
Min nTPM: 62.0
Sample A Female 96.9
Sample B Female 62.0
Sample C Male 114.3
Sample D Male 90.0
Septum
nTPM: 76.2
Samples: 4

Max nTPM: 82.5
Min nTPM: 64.1
Sample A Female 82.5
Sample B Female 64.1
Sample C Male 76.7
Sample D Male 81.3
Ventral pallidum
nTPM: 75.3
Samples: 4

Max nTPM: 83.7
Min nTPM: 59.1
Sample A Female 59.1
Sample B Female 83.7
Sample C Male 80.1
Sample D Male 78.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 101.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 101.3
Samples: 4

Max nTPM: 107.2
Min nTPM: 93.5
Sample A Male 98.1
Sample B Male 93.5
Sample C Female 107.2
Sample D Female 106.5
Septum
nTPM: 89.0
Samples: 4

Max nTPM: 100.2
Min nTPM: 81.2
Sample A Male 81.7
Sample B Male 100.2
Sample C Female 93.0
Sample D Female 81.2
Ventral forebrain
nTPM: 96.4
Samples: 4

Max nTPM: 109.2
Min nTPM: 89.3
Sample A Male 89.3
Sample B Male 95.5
Sample C Female 109.2
Sample D Female 91.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
69446352 Antisense, RP_050419_01_D12, Mouse strain C57BL/6J (56 days, male) 0.3
70919663 Antisense, RP_050713_01_H01, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
69446352 Antisense, RP_050419_01_D12, Mouse strain C57BL/6J (56 days, male) 0.2
70919663 Antisense, RP_050713_01_H01, Mouse strain C57BL/6J (56 days, male) 0.0

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