HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:19.2 nTPM
HPA Brain:21.6 nTPM
GTEx:19.2 nTPM
FANTOM5:71.6 Scaled Tags Per Million
Pig:87.3 nTPM
Mouse:101.2 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA043127
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 21.6
Sample id Sample description nTPM
Hippocampus
nTPM: 21.6
1855 Male, age 76, left hemisphere 24.2
1898 Male, age 80, left hemisphere 23.9
2529 Female, age 94, left hemisphere 23.0
1911 Female, age 85, right hemisphere 22.4
2148 Female, age 91, left hemisphere 19.5
2621 Female, age 67, right hemisphere 16.8
Dentate gyrus
nTPM: 18.6
2010 Male, age 76, both hemispheres 23.4
2528 Male, age 74, both hemispheres 21.5
1927 Female, age 91, both hemispheres 20.0
2530 Female, age 94, left hemisphere 15.9
2246 Female, age 85, both hemispheres 15.6
2531 Female, age 67, both hemispheres 15.4
Entorhinal gyrus
nTPM: 21.2
2764 Male, age 80, right hemisphere 24.5
2117 Female, age 91, right hemisphere 24.4
2686 Male, age 75, right hemisphere 23.3
1938 Female, age 85, left hemisphere 22.1
1787 Male, age 76, left hemisphere 17.7
2613 Female, age 94, left hemisphere 15.0
Hippocampus, CA1
nTPM: 20.8
2749 Male, age 80, left hemisphere 23.5
1873 Female, age 85, both hemispheres 22.6
2527 Male, age 74, both hemispheres 22.1
2082 Female, age 91, right hemisphere 19.4
2045 Male, age 76, both hemispheres 16.1
Hippocampus, CA2
nTPM: 20.2
1963 Male, age 80, left hemisphere 25.4
2249 Male, age 74, both hemispheres 20.7
2113 Female, age 91, right hemisphere 20.2
1940 Female, age 85, left hemisphere 19.4
1892 Male, age 76, both hemispheres 19.3
2437 Female, age 94, left hemisphere 16.3
Hippocampus, CA3
nTPM: 19.8
1867 Male, age 76, both hemispheres 24.4
1891 Female, age 85, both hemispheres 21.1
2137 Male, age 80, left hemisphere 20.7
2436 Male, age 74, both hemispheres 20.0
2861 Female, age 67, both hemispheres 17.5
2620 Female, age 94, left hemisphere 14.9
Parahippocampal cortex
nTPM: 19.8
2692 Male, age 74, both hemispheres 24.7
1933 Female, age 85, both hemispheres 22.7
1990 Female, age 91, right hemisphere 22.5
1850 Male, age 80, both hemispheres 22.2
2018 Male, age 76, both hemispheres 20.6
2245 Female, age 91, both hemispheres 18.6
2532 Female, age 72, left hemisphere 18.5
2250 Female, age 67, right hemisphere 16.7
2622 Female, age 67, right hemisphere 16.4
2693 Female, age 94, both hemispheres 14.7
Perirhinal gyrus
nTPM: 19.6
1841 Female, age 85, right hemisphere 21.7
1794 Male, age 80, right hemisphere 21.4
1847 Female, age 91, left hemisphere 20.3
2521 Female, age 94, right hemisphere 18.7
2848 Male, age 76, right hemisphere 15.8
Subiculum
nTPM: 21.2
2729 Female, age 91, right hemisphere 24.6
1901 Male, age 80, both hemispheres 23.2
2619 Male, age 74, both hemispheres 21.3
1977 Female, age 85, both hemispheres 20.2
2042 Male, age 76, both hemispheres 19.3
2438 Female, age 94, left hemisphere 18.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 19.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.2
Samples: 197

Max nTPM: 41.2
Min nTPM: 8.7
Std nTPM: 5.6
Median nTPM: 18.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 41.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 39.8
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 36.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 36.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 34.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 33.4
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 31.8
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 31.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 30.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 29.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 29.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 71.6
FF:10169-103B7 60 years, female 84.1
FF:10153-102I9 76 years, female 59.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 87.3
Pig sample Sample description nTPM
Subiculum
nTPM: 66.8
Samples: 4

Max nTPM: 91.6
Min nTPM: 52.9
Sample A Female 91.6
Sample B Female 64.5
Sample C Male 52.9
Sample D Male 58.3
Dorsal hippocampus
nTPM: 87.3
Samples: 4

Max nTPM: 125.4
Min nTPM: 60.0
Sample A Female 125.4
Sample B Female 76.7
Sample C Male 87.2
Sample D Male 60.0
Entorhinal cortex
nTPM: 68.7
Samples: 4

Max nTPM: 88.9
Min nTPM: 52.9
Sample A Female 68.9
Sample B Female 88.9
Sample C Male 64.1
Sample D Male 52.9
Ventral hippocampus
nTPM: 67.9
Samples: 4

Max nTPM: 78.4
Min nTPM: 53.7
Sample A Female 68.5
Sample B Female 53.7
Sample C Male 71.1
Sample D Male 78.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 101.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 99.0
Samples: 4

Max nTPM: 111.9
Min nTPM: 87.4
Sample A Male 97.5
Sample B Male 99.3
Sample C Female 111.9
Sample D Female 87.4
Hippocampal formation
nTPM: 101.2
Samples: 4

Max nTPM: 113.2
Min nTPM: 93.9
Sample A Male 113.2
Sample B Male 93.9
Sample C Female 99.0
Sample D Female 98.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
69446352 Antisense, RP_050419_01_D12, Mouse strain C57BL/6J (56 days, male) 0.7
70919663 Antisense, RP_050713_01_H01, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org