HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:38.7 nTPM
HPA Brain:39.9 nTPM
GTEx:38.7 nTPM
FANTOM5:104.1 Scaled Tags Per Million
Pig:91.6 nTPM
Mouse:76.1 nTPM
Allen mouse:4.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041632
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.9
Sample id Sample description nTPM
Hippocampus
nTPM: 32.6
1898 Male, age 80, left hemisphere 36.8
2621 Female, age 67, right hemisphere 34.7
2529 Female, age 94, left hemisphere 34.3
2148 Female, age 91, left hemisphere 32.6
1911 Female, age 85, right hemisphere 28.7
1855 Male, age 76, left hemisphere 28.2
Dentate gyrus
nTPM: 31.5
2530 Female, age 94, left hemisphere 36.9
2531 Female, age 67, both hemispheres 34.1
1927 Female, age 91, both hemispheres 33.6
2246 Female, age 85, both hemispheres 29.1
2528 Male, age 74, both hemispheres 28.6
2010 Male, age 76, both hemispheres 27.1
Entorhinal gyrus
nTPM: 35.4
2686 Male, age 75, right hemisphere 37.6
1938 Female, age 85, left hemisphere 37.1
2764 Male, age 80, right hemisphere 36.9
2613 Female, age 94, left hemisphere 35.8
2117 Female, age 91, right hemisphere 33.7
1787 Male, age 76, left hemisphere 31.5
Hippocampus, CA1
nTPM: 31.0
2749 Male, age 80, left hemisphere 35.5
1873 Female, age 85, both hemispheres 31.4
2527 Male, age 74, both hemispheres 29.9
2045 Male, age 76, both hemispheres 29.4
2082 Female, age 91, right hemisphere 28.9
Hippocampus, CA2
nTPM: 32.2
1892 Male, age 76, both hemispheres 38.2
1963 Male, age 80, left hemisphere 35.4
1940 Female, age 85, left hemisphere 31.9
2437 Female, age 94, left hemisphere 31.7
2113 Female, age 91, right hemisphere 30.8
2249 Male, age 74, both hemispheres 25.4
Hippocampus, CA3
nTPM: 33.1
2861 Female, age 67, both hemispheres 36.4
2137 Male, age 80, left hemisphere 35.9
2620 Female, age 94, left hemisphere 35.7
1867 Male, age 76, both hemispheres 32.6
1891 Female, age 85, both hemispheres 32.4
2436 Male, age 74, both hemispheres 25.7
Parahippocampal cortex
nTPM: 33.6
1850 Male, age 80, both hemispheres 43.9
1990 Female, age 91, right hemisphere 36.2
2532 Female, age 72, left hemisphere 34.9
2692 Male, age 74, both hemispheres 34.5
2693 Female, age 94, both hemispheres 33.9
1933 Female, age 85, both hemispheres 33.1
2245 Female, age 91, both hemispheres 32.4
2622 Female, age 67, right hemisphere 32.1
2250 Female, age 67, right hemisphere 28.6
2018 Male, age 76, both hemispheres 26.2
Perirhinal gyrus
nTPM: 39.9
1841 Female, age 85, right hemisphere 43.8
1794 Male, age 80, right hemisphere 41.9
1847 Female, age 91, left hemisphere 40.8
2848 Male, age 76, right hemisphere 40.4
2521 Female, age 94, right hemisphere 32.3
Subiculum
nTPM: 31.8
2438 Female, age 94, left hemisphere 35.0
1901 Male, age 80, both hemispheres 34.9
1977 Female, age 85, both hemispheres 33.7
2619 Male, age 74, both hemispheres 30.8
2729 Female, age 91, right hemisphere 29.9
2042 Male, age 76, both hemispheres 26.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 38.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.7
Samples: 197

Max nTPM: 58.1
Min nTPM: 24.2
Std nTPM: 6.6
Median nTPM: 38.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 58.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 57.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 56.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 54.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 53.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 53.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 52.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 52.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 51.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 51.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 51.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 104.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 104.1
FF:10153-102I9 76 years, female 128.3
FF:10169-103B7 60 years, female 79.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 91.6
Pig sample Sample description nTPM
Subiculum
nTPM: 86.7
Samples: 4

Max nTPM: 120.6
Min nTPM: 69.0
Sample A Female 120.6
Sample B Female 79.4
Sample C Male 77.9
Sample D Male 69.0
Dorsal hippocampus
nTPM: 76.5
Samples: 4

Max nTPM: 89.8
Min nTPM: 60.5
Sample A Female 84.6
Sample B Female 71.1
Sample C Male 89.8
Sample D Male 60.5
Entorhinal cortex
nTPM: 91.6
Samples: 4

Max nTPM: 101.2
Min nTPM: 84.2
Sample A Female 91.8
Sample B Female 101.2
Sample C Male 89.0
Sample D Male 84.2
Ventral hippocampus
nTPM: 74.2
Samples: 4

Max nTPM: 88.2
Min nTPM: 59.6
Sample A Female 62.4
Sample B Female 59.6
Sample C Male 88.2
Sample D Male 86.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 76.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 75.9
Samples: 4

Max nTPM: 86.5
Min nTPM: 68.7
Sample A Male 75.6
Sample B Male 72.6
Sample C Female 68.7
Sample D Female 86.5
Hippocampal formation
nTPM: 76.1
Samples: 4

Max nTPM: 91.5
Min nTPM: 61.6
Sample A Male 61.6
Sample B Male 84.7
Sample C Female 91.5
Sample D Female 66.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.5
71232571 Antisense, RP_050412_01_E04, Mouse strain C57BL/6J (56 days, male) 4.5

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