MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.5 nTPM
HPA Brain:38.2 nTPM
GTEx:39.5 nTPM
FANTOM5:104.9 Scaled Tags Per Million
Pig:91.3 nTPM
Mouse:74.0 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.5
2586 Male, age 75, left hemisphere 50.6
2666 Male, age 74, left hemisphere 45.8
2019 Male, age 18, unknown 38.3
1870 Female, age 42, unknown 37.1
1827 Male, age 72, unknown 36.1
2219 Male, age 76, both hemispheres 34.4
1830 Male, age 51, unknown 34.0
1833 Male, age 53, unknown 33.7
2411 Female, age 72, unknown 33.0
2828 Female, age 72, unknown 32.3
Dorsal raphe nucleus
nTPM: 30.1
1828 Male, age 53, unknown 33.9
2047 Male, age 72, unknown 31.0
2016 Female, age 72, unknown 30.7
2750 Male, age 76, both hemispheres 28.2
2298 Female, age 72, unknown 27.0
Inferior colliculus
nTPM: 37.8
2849 Male, age 72, unknown 39.8
1848 Female, age 42, unknown 38.7
1890 Male, age 53, unknown 37.9
2097 Female, age 72, unknown 34.9
Median raphe nucleus
nTPM: 28.4
2220 Male, age 76, midline 28.4
Periaquaductal grey, anterior
nTPM: 37.6
2502 Female, age 75, unknown 40.1
1947 Male, age 18, unknown 39.0
1795 Male, age 51, unknown 33.9
Periaquaductal grey, dorsal
nTPM: 31.8
1840 Male, age 53, unknown 37.7
2464 Female, age 72, unknown 31.6
1831 Male, age 72, unknown 30.5
2850 Male, age 76, both hemispheres 27.5
Periaquaductal grey, lateral
nTPM: 27.0
2053 Male, age 18, unknown 31.5
2140 Male, age 76, both hemispheres 26.2
2272 Male, age 74, both hemispheres 23.4
Pretectal area
nTPM: 36.0
1817 Female, age 42, unknown 42.6
1816 Male, age 51, unknown 42.0
2407 Male, age 75, both hemispheres 42.0
2007 Male, age 72, unknown 41.4
1815 Male, age 53, unknown 38.5
1944 Female, age 72, unknown 38.2
2667 Female, age 75, unknown 34.6
2825 Male, age 18, unknown 34.1
2316 Male, age 76, right hemisphere 30.3
2224 Female, age 72, unknown 28.8
2273 Male, age 74, both hemispheres 23.0
Red nucleus
nTPM: 36.6
2584 Male, age 75, left hemisphere 46.7
2588 Male, age 74, left hemisphere 43.9
1821 Female, age 72, unknown 38.3
2725 Female, age 75, unknown 37.5
2785 Male, age 18, unknown 35.9
1865 Male, age 51, unknown 35.7
2503 Female, age 72, unknown 35.3
2769 Male, age 72, unknown 35.1
2227 Male, age 72, unknown 34.5
1954 Female, age 42, unknown 33.4
1904 Male, age 53, unknown 32.7
2823 Male, age 76, right hemisphere 30.5
Substantia nigra
nTPM: 38.2
2241 Male, age 72, unknown 42.0
2665 Male, age 74, both hemispheres 41.3
1916 Female, age 42, unknown 40.6
2583 Male, age 75, right hemisphere 40.2
1889 Female, age 72, unknown 38.2
1851 Male, age 51, unknown 37.6
1941 Male, age 53, unknown 37.1
2409 Female, age 72, unknown 37.1
2699 Male, age 18, unknown 35.3
2590 Female, age 75, unknown 32.7
Superior colliculus
nTPM: 36.6
2664 Male, age 75, both hemispheres 50.5
2668 Female, age 75, unknown 39.4
1895 Male, age 76, right hemisphere 37.4
1839 Male, age 51, unknown 36.8
2587 Male, age 74, left hemisphere 36.8
2087 Female, age 72, unknown 35.8
1796 Male, age 53, unknown 34.1
2261 Male, age 18, unknown 32.8
1913 Female, age 42, unknown 31.9
1995 Male, age 72, unknown 30.1
Ventral tegmental area
nTPM: 32.7
2410 Female, age 72, unknown 35.7
1915 Female, age 42, unknown 34.0
1942 Male, age 51, unknown 33.6
2223 Female, age 72, unknown 31.8
2218 Male, age 76, both hemispheres 31.2
2021 Male, age 53, unknown 29.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.5
Samples: 139

Max nTPM: 51.7
Min nTPM: 28.5
Std nTPM: 5.0
Median nTPM: 39.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 51.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 50.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 49.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 49.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 49.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 49.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 48.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 48.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 47.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 47.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 47.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 104.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 104.9
FF:10158-103A5 76 years, female 104.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 91.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 79.1
Samples: 4

Max nTPM: 93.2
Min nTPM: 67.7
Sample A Female 85.9
Sample B Female 69.4
Sample C Male 93.2
Sample D Male 67.7
Midbrain
nTPM: 87.4
Samples: 4

Max nTPM: 94.7
Min nTPM: 81.9
Sample A Female 81.9
Sample B Female 89.5
Sample C Male 83.4
Sample D Male 94.7
Periaqueductal gray
nTPM: 91.3
Samples: 3

Max nTPM: 102.8
Min nTPM: 80.7
Sample B Female 90.4
Sample C Male 102.8
Sample D Male 80.7
Superior colliculi
nTPM: 89.5
Samples: 4

Max nTPM: 106.5
Min nTPM: 60.1
Sample A Female 106.5
Sample B Female 60.1
Sample C Male 86.6
Sample D Male 104.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 74.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.0
Samples: 4

Max nTPM: 79.2
Min nTPM: 65.8
Sample A Male 65.8
Sample B Male 75.3
Sample C Female 79.2
Sample D Female 75.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
71232571 Antisense, RP_050412_01_E04, Mouse strain C57BL/6J (56 days, male) 1.3

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