MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.3 nTPM
HPA Brain:12.0 nTPM
GTEx:15.3 nTPM
FANTOM5:3.2 Scaled Tags Per Million
Pig:10.2 nTPM
Mouse:1.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.8
1870 Female, age 42, unknown 7.1
1827 Male, age 72, unknown 5.8
2828 Female, age 72, unknown 4.4
2219 Male, age 76, both hemispheres 4.3
2411 Female, age 72, unknown 4.1
2666 Male, age 74, left hemisphere 3.7
2586 Male, age 75, left hemisphere 3.0
1833 Male, age 53, unknown 2.4
1830 Male, age 51, unknown 2.3
2019 Male, age 18, unknown 1.3
Dorsal raphe nucleus
nTPM: 7.3
2298 Female, age 72, unknown 17.2
2047 Male, age 72, unknown 7.9
1828 Male, age 53, unknown 5.5
2750 Male, age 76, both hemispheres 3.6
2016 Female, age 72, unknown 2.4
Inferior colliculus
nTPM: 3.9
2097 Female, age 72, unknown 6.8
1890 Male, age 53, unknown 3.8
1848 Female, age 42, unknown 2.6
2849 Male, age 72, unknown 2.5
Median raphe nucleus
nTPM: 12.0
2220 Male, age 76, midline 12.0
Periaquaductal grey, anterior
nTPM: 8.7
1795 Male, age 51, unknown 14.4
1947 Male, age 18, unknown 7.1
2502 Female, age 75, unknown 4.4
Periaquaductal grey, dorsal
nTPM: 11.2
2850 Male, age 76, both hemispheres 16.7
1840 Male, age 53, unknown 11.4
1831 Male, age 72, unknown 9.8
2464 Female, age 72, unknown 7.0
Periaquaductal grey, lateral
nTPM: 11.9
2272 Male, age 74, both hemispheres 18.4
2053 Male, age 18, unknown 11.4
2140 Male, age 76, both hemispheres 5.9
Pretectal area
nTPM: 7.8
2273 Male, age 74, both hemispheres 22.7
2224 Female, age 72, unknown 8.7
2825 Male, age 18, unknown 7.4
1944 Female, age 72, unknown 7.1
1816 Male, age 51, unknown 6.8
2316 Male, age 76, right hemisphere 6.5
2407 Male, age 75, both hemispheres 6.4
2667 Female, age 75, unknown 5.9
1815 Male, age 53, unknown 5.8
2007 Male, age 72, unknown 5.3
1817 Female, age 42, unknown 3.6
Red nucleus
nTPM: 2.0
2725 Female, age 75, unknown 4.5
2584 Male, age 75, left hemisphere 3.9
2588 Male, age 74, left hemisphere 3.3
2503 Female, age 72, unknown 2.1
2769 Male, age 72, unknown 1.9
2227 Male, age 72, unknown 1.6
1954 Female, age 42, unknown 1.4
2785 Male, age 18, unknown 1.3
1821 Female, age 72, unknown 1.2
1865 Male, age 51, unknown 1.2
1904 Male, age 53, unknown 1.1
2823 Male, age 76, right hemisphere 1.0
Substantia nigra
nTPM: 5.8
2699 Male, age 18, unknown 8.3
1941 Male, age 53, unknown 7.7
2590 Female, age 75, unknown 6.4
1889 Female, age 72, unknown 6.1
2409 Female, age 72, unknown 6.0
1851 Male, age 51, unknown 5.7
2583 Male, age 75, right hemisphere 5.3
1916 Female, age 42, unknown 4.7
2241 Male, age 72, unknown 4.7
2665 Male, age 74, both hemispheres 2.5
Superior colliculus
nTPM: 7.1
2261 Male, age 18, unknown 12.0
2587 Male, age 74, left hemisphere 9.2
2664 Male, age 75, both hemispheres 8.8
1995 Male, age 72, unknown 8.5
1796 Male, age 53, unknown 8.4
1839 Male, age 51, unknown 6.2
2668 Female, age 75, unknown 5.8
1913 Female, age 42, unknown 4.6
2087 Female, age 72, unknown 4.4
1895 Male, age 76, right hemisphere 3.2
Ventral tegmental area
nTPM: 6.3
2021 Male, age 53, unknown 8.3
2223 Female, age 72, unknown 8.0
1915 Female, age 42, unknown 7.4
1942 Male, age 51, unknown 6.8
2218 Male, age 76, both hemispheres 3.7
2410 Female, age 72, unknown 3.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.3
Samples: 139

Max nTPM: 50.5
Min nTPM: 1.3
Std nTPM: 9.8
Median nTPM: 13.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 50.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 46.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 42.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 41.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 40.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 38.6
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 37.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 37.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 35.9
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 32.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 30.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.2
FF:10158-103A5 76 years, female 3.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.6
Samples: 4

Max nTPM: 11.2
Min nTPM: 3.4
Sample A Female 11.2
Sample B Female 10.0
Sample C Male 9.7
Sample D Male 3.4
Midbrain
nTPM: 7.8
Samples: 4

Max nTPM: 11.5
Min nTPM: 5.7
Sample A Female 6.3
Sample B Female 7.8
Sample C Male 11.5
Sample D Male 5.7
Periaqueductal gray
nTPM: 8.3
Samples: 3

Max nTPM: 8.5
Min nTPM: 8.1
Sample B Female 8.5
Sample C Male 8.3
Sample D Male 8.1
Superior colliculi
nTPM: 10.2
Samples: 4

Max nTPM: 16.0
Min nTPM: 6.6
Sample A Female 11.4
Sample B Female 16.0
Sample C Male 6.9
Sample D Male 6.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.6
Samples: 4

Max nTPM: 2.9
Min nTPM: 0.2
Sample A Male 1.4
Sample B Male 1.8
Sample C Female 0.2
Sample D Female 2.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70566005 Antisense, RP_050628_02_A08, Mouse strain C57BL/6J (56 days, male) 0.0

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