MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.3 nTPM
HPA Brain:28.4 nTPM
GTEx:24.3 nTPM
FANTOM5:46.0 Scaled Tags Per Million
Pig:24.1 nTPM
Mouse:12.5 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.1
2586 Male, age 75, left hemisphere 34.5
2828 Female, age 72, unknown 27.0
1870 Female, age 42, unknown 26.6
2411 Female, age 72, unknown 25.3
1827 Male, age 72, unknown 24.7
2666 Male, age 74, left hemisphere 22.8
1833 Male, age 53, unknown 22.7
1830 Male, age 51, unknown 21.6
2219 Male, age 76, both hemispheres 16.2
2019 Male, age 18, unknown 9.2
Dorsal raphe nucleus
nTPM: 28.4
2047 Male, age 72, unknown 35.6
2298 Female, age 72, unknown 29.3
2750 Male, age 76, both hemispheres 27.4
1828 Male, age 53, unknown 25.0
2016 Female, age 72, unknown 24.6
Inferior colliculus
nTPM: 18.1
2849 Male, age 72, unknown 23.7
1848 Female, age 42, unknown 19.8
1890 Male, age 53, unknown 15.3
2097 Female, age 72, unknown 13.8
Median raphe nucleus
nTPM: 28.3
2220 Male, age 76, midline 28.3
Periaquaductal grey, anterior
nTPM: 27.4
1795 Male, age 51, unknown 32.0
1947 Male, age 18, unknown 31.1
2502 Female, age 75, unknown 19.0
Periaquaductal grey, dorsal
nTPM: 23.1
2850 Male, age 76, both hemispheres 26.3
1840 Male, age 53, unknown 25.8
2464 Female, age 72, unknown 20.5
1831 Male, age 72, unknown 19.8
Periaquaductal grey, lateral
nTPM: 27.6
2053 Male, age 18, unknown 28.8
2272 Male, age 74, both hemispheres 27.7
2140 Male, age 76, both hemispheres 26.3
Pretectal area
nTPM: 22.0
2825 Male, age 18, unknown 35.8
2224 Female, age 72, unknown 27.3
2316 Male, age 76, right hemisphere 25.8
2273 Male, age 74, both hemispheres 24.5
2407 Male, age 75, both hemispheres 24.4
2667 Female, age 75, unknown 21.9
1817 Female, age 42, unknown 19.5
1815 Male, age 53, unknown 17.2
1944 Female, age 72, unknown 15.5
1816 Male, age 51, unknown 14.9
2007 Male, age 72, unknown 14.9
Red nucleus
nTPM: 18.2
2725 Female, age 75, unknown 26.2
2823 Male, age 76, right hemisphere 25.4
2588 Male, age 74, left hemisphere 21.9
2584 Male, age 75, left hemisphere 17.5
2227 Male, age 72, unknown 17.3
2769 Male, age 72, unknown 17.3
1865 Male, age 51, unknown 16.7
2503 Female, age 72, unknown 16.6
1821 Female, age 72, unknown 15.7
1904 Male, age 53, unknown 15.6
1954 Female, age 42, unknown 14.8
2785 Male, age 18, unknown 12.9
Substantia nigra
nTPM: 22.7
2699 Male, age 18, unknown 33.4
1851 Male, age 51, unknown 24.9
2241 Male, age 72, unknown 23.2
2665 Male, age 74, both hemispheres 23.1
1916 Female, age 42, unknown 22.2
1941 Male, age 53, unknown 21.4
2583 Male, age 75, right hemisphere 21.2
2409 Female, age 72, unknown 21.1
2590 Female, age 75, unknown 19.5
1889 Female, age 72, unknown 17.0
Superior colliculus
nTPM: 21.2
1796 Male, age 53, unknown 28.2
1839 Male, age 51, unknown 25.4
1913 Female, age 42, unknown 23.2
2668 Female, age 75, unknown 22.2
2261 Male, age 18, unknown 21.7
2664 Male, age 75, both hemispheres 21.3
1995 Male, age 72, unknown 18.4
2587 Male, age 74, left hemisphere 18.3
2087 Female, age 72, unknown 17.2
1895 Male, age 76, right hemisphere 16.3
Ventral tegmental area
nTPM: 24.1
2021 Male, age 53, unknown 29.1
2223 Female, age 72, unknown 26.2
1915 Female, age 42, unknown 24.0
1942 Male, age 51, unknown 22.7
2410 Female, age 72, unknown 21.8
2218 Male, age 76, both hemispheres 21.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.3
Samples: 139

Max nTPM: 71.2
Min nTPM: 10.9
Std nTPM: 9.5
Median nTPM: 21.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 71.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 58.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 52.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 51.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 49.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 46.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 45.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 44.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 43.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 43.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 42.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.0
FF:10158-103A5 76 years, female 46.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.1
Samples: 4

Max nTPM: 30.9
Min nTPM: 12.1
Sample A Female 30.9
Sample B Female 25.0
Sample C Male 28.5
Sample D Male 12.1
Midbrain
nTPM: 18.0
Samples: 4

Max nTPM: 23.4
Min nTPM: 13.6
Sample A Female 13.6
Sample B Female 16.7
Sample C Male 23.4
Sample D Male 18.3
Periaqueductal gray
nTPM: 18.3
Samples: 3

Max nTPM: 25.4
Min nTPM: 14.6
Sample B Female 15.0
Sample C Male 25.4
Sample D Male 14.6
Superior colliculi
nTPM: 20.9
Samples: 4

Max nTPM: 31.8
Min nTPM: 10.0
Sample A Female 24.3
Sample B Female 31.8
Sample C Male 10.0
Sample D Male 17.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.5
Samples: 4

Max nTPM: 14.4
Min nTPM: 11.7
Sample A Male 11.9
Sample B Male 11.8
Sample C Female 14.4
Sample D Female 11.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
69672264 Antisense, RP_050428_03_D05, Mouse strain C57BL/6J (56 days, male) 1.3

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