MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:81.9 nTPM
HPA Brain:40.1 nTPM
GTEx:81.9 nTPM
FANTOM5:67.9 Scaled Tags Per Million
Pig:100.2 nTPM
Mouse:92.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.6
2019 Male, age 18, unknown 44.3
1870 Female, age 42, unknown 39.8
1827 Male, age 72, unknown 38.7
2411 Female, age 72, unknown 37.4
1833 Male, age 53, unknown 33.8
2219 Male, age 76, both hemispheres 33.8
2828 Female, age 72, unknown 33.3
1830 Male, age 51, unknown 32.1
2666 Male, age 74, left hemisphere 27.5
2586 Male, age 75, left hemisphere 25.3
Dorsal raphe nucleus
nTPM: 35.6
2298 Female, age 72, unknown 42.4
2047 Male, age 72, unknown 34.8
1828 Male, age 53, unknown 34.5
2750 Male, age 76, both hemispheres 33.9
2016 Female, age 72, unknown 32.4
Inferior colliculus
nTPM: 36.3
1848 Female, age 42, unknown 36.9
2097 Female, age 72, unknown 36.8
1890 Male, age 53, unknown 36.4
2849 Male, age 72, unknown 35.0
Median raphe nucleus
nTPM: 34.3
2220 Male, age 76, midline 34.3
Periaquaductal grey, anterior
nTPM: 34.9
1947 Male, age 18, unknown 37.1
1795 Male, age 51, unknown 33.8
2502 Female, age 75, unknown 33.7
Periaquaductal grey, dorsal
nTPM: 35.3
2850 Male, age 76, both hemispheres 41.7
1831 Male, age 72, unknown 34.4
1840 Male, age 53, unknown 33.3
2464 Female, age 72, unknown 31.7
Periaquaductal grey, lateral
nTPM: 35.5
2272 Male, age 74, both hemispheres 36.1
2140 Male, age 76, both hemispheres 36.0
2053 Male, age 18, unknown 34.4
Pretectal area
nTPM: 40.1
1944 Female, age 72, unknown 46.1
2007 Male, age 72, unknown 44.5
1817 Female, age 42, unknown 43.4
1816 Male, age 51, unknown 43.1
2316 Male, age 76, right hemisphere 41.6
2273 Male, age 74, both hemispheres 40.8
1815 Male, age 53, unknown 40.3
2224 Female, age 72, unknown 39.7
2667 Female, age 75, unknown 36.9
2407 Male, age 75, both hemispheres 33.4
2825 Male, age 18, unknown 31.1
Red nucleus
nTPM: 37.9
2725 Female, age 75, unknown 44.6
1821 Female, age 72, unknown 42.9
1865 Male, age 51, unknown 40.9
1954 Female, age 42, unknown 40.1
2823 Male, age 76, right hemisphere 39.0
1904 Male, age 53, unknown 38.3
2785 Male, age 18, unknown 37.4
2769 Male, age 72, unknown 36.4
2503 Female, age 72, unknown 35.4
2584 Male, age 75, left hemisphere 35.4
2227 Male, age 72, unknown 34.5
2588 Male, age 74, left hemisphere 29.6
Substantia nigra
nTPM: 37.1
1889 Female, age 72, unknown 46.5
1941 Male, age 53, unknown 41.0
2409 Female, age 72, unknown 40.9
1916 Female, age 42, unknown 39.5
2241 Male, age 72, unknown 38.0
1851 Male, age 51, unknown 37.3
2590 Female, age 75, unknown 35.0
2665 Male, age 74, both hemispheres 33.8
2699 Male, age 18, unknown 33.2
2583 Male, age 75, right hemisphere 25.9
Superior colliculus
nTPM: 36.3
1895 Male, age 76, right hemisphere 41.0
2587 Male, age 74, left hemisphere 39.9
1913 Female, age 42, unknown 38.8
2261 Male, age 18, unknown 38.4
1839 Male, age 51, unknown 37.7
1796 Male, age 53, unknown 37.5
2668 Female, age 75, unknown 35.5
2087 Female, age 72, unknown 34.9
1995 Male, age 72, unknown 33.4
2664 Male, age 75, both hemispheres 25.5
Ventral tegmental area
nTPM: 35.9
2410 Female, age 72, unknown 40.0
2218 Male, age 76, both hemispheres 39.9
1915 Female, age 42, unknown 37.1
2223 Female, age 72, unknown 34.4
2021 Male, age 53, unknown 32.5
1942 Male, age 51, unknown 31.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 81.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 81.9
Samples: 139

Max nTPM: 172.3
Min nTPM: 49.3
Std nTPM: 18.5
Median nTPM: 80.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 172.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 142.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 139.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 135.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 125.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 124.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 123.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 114.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 113.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 112.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 109.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.9
FF:10158-103A5 76 years, female 67.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 100.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 94.9
Samples: 4

Max nTPM: 151.5
Min nTPM: 64.9
Sample A Female 151.5
Sample B Female 77.5
Sample C Male 85.7
Sample D Male 64.9
Midbrain
nTPM: 100.2
Samples: 4

Max nTPM: 153.9
Min nTPM: 69.4
Sample A Female 153.9
Sample B Female 93.5
Sample C Male 84.1
Sample D Male 69.4
Periaqueductal gray
nTPM: 71.0
Samples: 3

Max nTPM: 71.3
Min nTPM: 70.3
Sample B Female 71.3
Sample C Male 71.3
Sample D Male 70.3
Superior colliculi
nTPM: 96.9
Samples: 4

Max nTPM: 121.7
Min nTPM: 77.9
Sample A Female 121.7
Sample B Female 77.9
Sample C Male 101.1
Sample D Male 87.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 92.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.2
Samples: 4

Max nTPM: 100.7
Min nTPM: 83.6
Sample A Male 91.7
Sample B Male 100.7
Sample C Female 83.6
Sample D Female 92.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70295876 Antisense, RP_050531_04_B03, Mouse strain C57BL/6J (56 days, male) 0.2

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