MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.0 nTPM
HPA Brain:54.6 nTPM
GTEx:31.0 nTPM
FANTOM5:66.9 Scaled Tags Per Million
Pig:17.5 nTPM
Mouse:48.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.1
2586 Male, age 75, left hemisphere 60.7
2411 Female, age 72, unknown 54.0
1830 Male, age 51, unknown 50.7
2019 Male, age 18, unknown 50.2
1870 Female, age 42, unknown 46.9
2828 Female, age 72, unknown 46.8
1833 Male, age 53, unknown 46.5
2666 Male, age 74, left hemisphere 46.4
2219 Male, age 76, both hemispheres 44.9
1827 Male, age 72, unknown 44.1
Dorsal raphe nucleus
nTPM: 41.8
2750 Male, age 76, both hemispheres 51.6
2047 Male, age 72, unknown 44.2
1828 Male, age 53, unknown 39.6
2298 Female, age 72, unknown 37.3
2016 Female, age 72, unknown 36.1
Inferior colliculus
nTPM: 37.9
1890 Male, age 53, unknown 40.7
2849 Male, age 72, unknown 38.2
1848 Female, age 42, unknown 37.3
2097 Female, age 72, unknown 35.5
Median raphe nucleus
nTPM: 40.8
2220 Male, age 76, midline 40.8
Periaquaductal grey, anterior
nTPM: 44.6
2502 Female, age 75, unknown 48.5
1795 Male, age 51, unknown 43.0
1947 Male, age 18, unknown 42.2
Periaquaductal grey, dorsal
nTPM: 35.8
2464 Female, age 72, unknown 42.6
1831 Male, age 72, unknown 36.5
1840 Male, age 53, unknown 33.4
2850 Male, age 76, both hemispheres 30.5
Periaquaductal grey, lateral
nTPM: 38.7
2053 Male, age 18, unknown 42.7
2272 Male, age 74, both hemispheres 39.7
2140 Male, age 76, both hemispheres 33.6
Pretectal area
nTPM: 43.0
2407 Male, age 75, both hemispheres 53.5
2316 Male, age 76, right hemisphere 47.9
2007 Male, age 72, unknown 45.6
2667 Female, age 75, unknown 45.4
1815 Male, age 53, unknown 44.2
2825 Male, age 18, unknown 43.9
1817 Female, age 42, unknown 41.8
1816 Male, age 51, unknown 40.4
2273 Male, age 74, both hemispheres 37.5
2224 Female, age 72, unknown 37.3
1944 Female, age 72, unknown 35.8
Red nucleus
nTPM: 54.6
2588 Male, age 74, left hemisphere 63.9
2584 Male, age 75, left hemisphere 59.8
1904 Male, age 53, unknown 58.8
2769 Male, age 72, unknown 57.8
1865 Male, age 51, unknown 56.5
2227 Male, age 72, unknown 55.3
2823 Male, age 76, right hemisphere 54.0
2503 Female, age 72, unknown 53.0
2785 Male, age 18, unknown 52.0
1954 Female, age 42, unknown 49.0
1821 Female, age 72, unknown 48.8
2725 Female, age 75, unknown 45.9
Substantia nigra
nTPM: 46.9
2583 Male, age 75, right hemisphere 54.2
2409 Female, age 72, unknown 52.6
1916 Female, age 42, unknown 49.5
1851 Male, age 51, unknown 48.9
1941 Male, age 53, unknown 48.9
2699 Male, age 18, unknown 46.1
2665 Male, age 74, both hemispheres 44.1
2590 Female, age 75, unknown 42.9
1889 Female, age 72, unknown 41.2
2241 Male, age 72, unknown 40.6
Superior colliculus
nTPM: 44.9
2664 Male, age 75, both hemispheres 51.8
2668 Female, age 75, unknown 50.0
1913 Female, age 42, unknown 47.4
1839 Male, age 51, unknown 44.9
1995 Male, age 72, unknown 44.6
2587 Male, age 74, left hemisphere 43.1
1796 Male, age 53, unknown 42.8
2261 Male, age 18, unknown 42.7
2087 Female, age 72, unknown 42.0
1895 Male, age 76, right hemisphere 39.8
Ventral tegmental area
nTPM: 47.0
2223 Female, age 72, unknown 54.8
2410 Female, age 72, unknown 50.9
2021 Male, age 53, unknown 45.4
1942 Male, age 51, unknown 45.2
2218 Male, age 76, both hemispheres 43.3
1915 Female, age 42, unknown 42.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.0
Samples: 139

Max nTPM: 51.5
Min nTPM: 18.2
Std nTPM: 5.8
Median nTPM: 31.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 51.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 49.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 48.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 43.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 42.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 42.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 41.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 40.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 40.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 39.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 38.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.9
FF:10158-103A5 76 years, female 66.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.5
Samples: 4

Max nTPM: 18.6
Min nTPM: 13.9
Sample A Female 18.6
Sample B Female 13.9
Sample C Male 15.2
Sample D Male 14.3
Midbrain
nTPM: 16.4
Samples: 4

Max nTPM: 18.7
Min nTPM: 13.2
Sample A Female 16.8
Sample B Female 13.2
Sample C Male 18.7
Sample D Male 16.7
Periaqueductal gray
nTPM: 13.1
Samples: 3

Max nTPM: 14.6
Min nTPM: 11.6
Sample B Female 13.2
Sample C Male 14.6
Sample D Male 11.6
Superior colliculi
nTPM: 17.5
Samples: 4

Max nTPM: 18.9
Min nTPM: 16.2
Sample A Female 18.9
Sample B Female 16.2
Sample C Male 18.1
Sample D Male 16.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 48.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.0
Samples: 4

Max nTPM: 52.9
Min nTPM: 43.1
Sample A Male 52.9
Sample B Male 49.5
Sample C Female 43.1
Sample D Female 46.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
601190 Antisense, RP_040831_01_H09, Mouse strain C57BL/6J (56 days, male) 0.1

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