MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.3 nTPM
HPA Brain:75.1 nTPM
GTEx:50.3 nTPM
FANTOM5:63.6 Scaled Tags Per Million
Mouse:163.2 nTPM
Allen mouse:5.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 75.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.5
2219 Male, age 76, both hemispheres 64.9
1827 Male, age 72, unknown 64.5
2019 Male, age 18, unknown 62.3
2666 Male, age 74, left hemisphere 60.4
1833 Male, age 53, unknown 54.6
2828 Female, age 72, unknown 53.0
1870 Female, age 42, unknown 50.1
1830 Male, age 51, unknown 46.9
2411 Female, age 72, unknown 46.5
2586 Male, age 75, left hemisphere 42.1
Dorsal raphe nucleus
nTPM: 56.0
1828 Male, age 53, unknown 65.8
2298 Female, age 72, unknown 57.1
2047 Male, age 72, unknown 56.2
2750 Male, age 76, both hemispheres 51.0
2016 Female, age 72, unknown 50.1
Inferior colliculus
nTPM: 63.9
2849 Male, age 72, unknown 75.0
2097 Female, age 72, unknown 61.2
1848 Female, age 42, unknown 59.9
1890 Male, age 53, unknown 59.5
Median raphe nucleus
nTPM: 71.3
2220 Male, age 76, midline 71.3
Periaquaductal grey, anterior
nTPM: 52.1
1795 Male, age 51, unknown 58.2
1947 Male, age 18, unknown 52.9
2502 Female, age 75, unknown 45.4
Periaquaductal grey, dorsal
nTPM: 67.3
2850 Male, age 76, both hemispheres 83.0
1840 Male, age 53, unknown 69.9
1831 Male, age 72, unknown 65.1
2464 Female, age 72, unknown 51.2
Periaquaductal grey, lateral
nTPM: 60.4
2272 Male, age 74, both hemispheres 67.2
2140 Male, age 76, both hemispheres 64.4
2053 Male, age 18, unknown 49.6
Pretectal area
nTPM: 75.1
1944 Female, age 72, unknown 97.9
1817 Female, age 42, unknown 95.3
1816 Male, age 51, unknown 92.5
2007 Male, age 72, unknown 80.1
1815 Male, age 53, unknown 79.4
2667 Female, age 75, unknown 79.0
2273 Male, age 74, both hemispheres 66.2
2407 Male, age 75, both hemispheres 65.8
2224 Female, age 72, unknown 65.4
2825 Male, age 18, unknown 57.4
2316 Male, age 76, right hemisphere 46.6
Red nucleus
nTPM: 49.7
2725 Female, age 75, unknown 65.6
2785 Male, age 18, unknown 59.8
2823 Male, age 76, right hemisphere 59.1
1821 Female, age 72, unknown 57.6
1954 Female, age 42, unknown 52.8
2588 Male, age 74, left hemisphere 47.8
2503 Female, age 72, unknown 45.8
2584 Male, age 75, left hemisphere 45.8
2227 Male, age 72, unknown 43.6
2769 Male, age 72, unknown 41.5
1865 Male, age 51, unknown 38.5
1904 Male, age 53, unknown 38.5
Substantia nigra
nTPM: 68.4
1916 Female, age 42, unknown 89.6
1889 Female, age 72, unknown 76.4
2409 Female, age 72, unknown 73.9
1941 Male, age 53, unknown 72.5
2241 Male, age 72, unknown 71.9
2665 Male, age 74, both hemispheres 69.2
2699 Male, age 18, unknown 68.7
1851 Male, age 51, unknown 66.4
2590 Female, age 75, unknown 50.4
2583 Male, age 75, right hemisphere 45.0
Superior colliculus
nTPM: 60.2
2087 Female, age 72, unknown 80.0
1839 Male, age 51, unknown 64.5
2668 Female, age 75, unknown 62.9
2261 Male, age 18, unknown 62.8
1895 Male, age 76, right hemisphere 62.2
1796 Male, age 53, unknown 62.1
2587 Male, age 74, left hemisphere 56.8
2664 Male, age 75, both hemispheres 51.8
1913 Female, age 42, unknown 50.1
1995 Male, age 72, unknown 48.4
Ventral tegmental area
nTPM: 57.9
2218 Male, age 76, both hemispheres 75.7
1915 Female, age 42, unknown 63.5
1942 Male, age 51, unknown 55.2
2410 Female, age 72, unknown 51.2
2021 Male, age 53, unknown 50.8
2223 Female, age 72, unknown 50.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.3
Samples: 139

Max nTPM: 94.7
Min nTPM: 14.0
Std nTPM: 15.2
Median nTPM: 48.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 94.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 92.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 88.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 87.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 87.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 80.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 80.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 77.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 74.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 72.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 71.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.6
FF:10158-103A5 76 years, female 63.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 163.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 163.2
Samples: 4

Max nTPM: 169.2
Min nTPM: 158.1
Sample A Male 169.2
Sample B Male 158.1
Sample C Female 163.3
Sample D Female 162.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.3
67979036 Antisense, RP_040923_02_B06, Mouse strain C57BL/6J (56 days, male) 5.3

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