MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.9 nTPM
HPA Brain:13.1 nTPM
GTEx:37.9 nTPM
FANTOM5:125.4 Scaled Tags Per Million
Pig:62.6 nTPM
Mouse:53.9 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.1
2411 Female, age 72, unknown 13.9
2019 Male, age 18, unknown 12.0
1827 Male, age 72, unknown 10.1
1830 Male, age 51, unknown 8.9
1833 Male, age 53, unknown 8.9
1870 Female, age 42, unknown 7.9
2219 Male, age 76, both hemispheres 6.7
2828 Female, age 72, unknown 6.2
2586 Male, age 75, left hemisphere 3.8
2666 Male, age 74, left hemisphere 2.6
Dorsal raphe nucleus
nTPM: 9.8
2016 Female, age 72, unknown 13.5
1828 Male, age 53, unknown 9.6
2047 Male, age 72, unknown 9.4
2750 Male, age 76, both hemispheres 8.7
2298 Female, age 72, unknown 8.0
Inferior colliculus
nTPM: 8.6
2097 Female, age 72, unknown 12.8
1848 Female, age 42, unknown 10.8
1890 Male, age 53, unknown 6.9
2849 Male, age 72, unknown 4.0
Median raphe nucleus
nTPM: 10.3
2220 Male, age 76, midline 10.3
Periaquaductal grey, anterior
nTPM: 12.4
2502 Female, age 75, unknown 19.8
1947 Male, age 18, unknown 10.4
1795 Male, age 51, unknown 7.1
Periaquaductal grey, dorsal
nTPM: 11.9
2464 Female, age 72, unknown 16.0
1840 Male, age 53, unknown 11.9
2850 Male, age 76, both hemispheres 10.3
1831 Male, age 72, unknown 9.6
Periaquaductal grey, lateral
nTPM: 13.1
2053 Male, age 18, unknown 15.7
2272 Male, age 74, both hemispheres 13.1
2140 Male, age 76, both hemispheres 10.4
Pretectal area
nTPM: 9.3
2273 Male, age 74, both hemispheres 12.9
2316 Male, age 76, right hemisphere 12.0
2224 Female, age 72, unknown 11.1
1944 Female, age 72, unknown 10.0
1815 Male, age 53, unknown 9.6
1817 Female, age 42, unknown 9.3
2007 Male, age 72, unknown 8.4
2407 Male, age 75, both hemispheres 8.0
2667 Female, age 75, unknown 7.7
1816 Male, age 51, unknown 7.4
2825 Male, age 18, unknown 5.8
Red nucleus
nTPM: 9.0
2823 Male, age 76, right hemisphere 11.9
2588 Male, age 74, left hemisphere 11.8
1821 Female, age 72, unknown 11.6
2785 Male, age 18, unknown 11.0
1954 Female, age 42, unknown 10.5
2769 Male, age 72, unknown 10.4
1904 Male, age 53, unknown 9.3
1865 Male, age 51, unknown 8.2
2227 Male, age 72, unknown 6.7
2503 Female, age 72, unknown 6.0
2584 Male, age 75, left hemisphere 5.5
2725 Female, age 75, unknown 5.2
Substantia nigra
nTPM: 5.6
1851 Male, age 51, unknown 8.3
2241 Male, age 72, unknown 7.9
1889 Female, age 72, unknown 7.1
1916 Female, age 42, unknown 6.5
2665 Male, age 74, both hemispheres 5.9
1941 Male, age 53, unknown 5.8
2583 Male, age 75, right hemisphere 4.8
2590 Female, age 75, unknown 4.1
2699 Male, age 18, unknown 3.8
2409 Female, age 72, unknown 1.6
Superior colliculus
nTPM: 9.7
1995 Male, age 72, unknown 13.0
2668 Female, age 75, unknown 12.7
2664 Male, age 75, both hemispheres 12.3
1913 Female, age 42, unknown 10.0
1839 Male, age 51, unknown 9.5
1796 Male, age 53, unknown 9.2
2261 Male, age 18, unknown 8.6
2087 Female, age 72, unknown 8.2
1895 Male, age 76, right hemisphere 7.0
2587 Male, age 74, left hemisphere 6.5
Ventral tegmental area
nTPM: 10.0
2410 Female, age 72, unknown 16.3
1942 Male, age 51, unknown 10.8
2223 Female, age 72, unknown 9.4
2218 Male, age 76, both hemispheres 8.8
2021 Male, age 53, unknown 7.6
1915 Female, age 42, unknown 7.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.9
Samples: 139

Max nTPM: 61.0
Min nTPM: 22.0
Std nTPM: 7.6
Median nTPM: 37.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 61.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 57.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 55.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 55.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 53.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 52.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 51.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 49.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 49.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 49.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 49.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.4
FF:10158-103A5 76 years, female 125.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 62.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.5
Samples: 4

Max nTPM: 63.6
Min nTPM: 54.1
Sample A Female 61.5
Sample B Female 54.8
Sample C Male 54.1
Sample D Male 63.6
Midbrain
nTPM: 62.6
Samples: 4

Max nTPM: 86.9
Min nTPM: 50.8
Sample A Female 86.9
Sample B Female 60.6
Sample C Male 50.8
Sample D Male 52.2
Periaqueductal gray
nTPM: 56.8
Samples: 3

Max nTPM: 57.6
Min nTPM: 55.7
Sample B Female 55.7
Sample C Male 57.1
Sample D Male 57.6
Superior colliculi
nTPM: 57.3
Samples: 4

Max nTPM: 61.1
Min nTPM: 52.2
Sample A Female 61.1
Sample B Female 52.2
Sample C Male 56.5
Sample D Male 59.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.9
Samples: 4

Max nTPM: 55.6
Min nTPM: 52.3
Sample A Male 54.4
Sample B Male 53.1
Sample C Female 55.6
Sample D Female 52.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
68546374 Antisense, RP_050120_02_D05, Mouse strain C57BL/6J (56 days, male) 2.2

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