MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.3 nTPM
HPA Brain:42.7 nTPM
GTEx:71.3 nTPM
FANTOM5:177.5 Scaled Tags Per Million
Pig:42.3 nTPM
Mouse:27.5 nTPM
Allen mouse:7.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.9
1827 Male, age 72, unknown 35.1
2219 Male, age 76, both hemispheres 34.9
1870 Female, age 42, unknown 29.1
1833 Male, age 53, unknown 28.4
2666 Male, age 74, left hemisphere 27.3
2828 Female, age 72, unknown 25.0
1830 Male, age 51, unknown 20.3
2586 Male, age 75, left hemisphere 16.2
2411 Female, age 72, unknown 13.9
2019 Male, age 18, unknown 8.5
Dorsal raphe nucleus
nTPM: 13.4
1828 Male, age 53, unknown 34.7
2750 Male, age 76, both hemispheres 11.7
2298 Female, age 72, unknown 9.5
2016 Female, age 72, unknown 7.5
2047 Male, age 72, unknown 3.5
Inferior colliculus
nTPM: 29.4
2849 Male, age 72, unknown 87.7
1890 Male, age 53, unknown 12.3
1848 Female, age 42, unknown 9.9
2097 Female, age 72, unknown 7.5
Median raphe nucleus
nTPM: 39.5
2220 Male, age 76, midline 39.5
Periaquaductal grey, anterior
nTPM: 12.4
2502 Female, age 75, unknown 17.3
1947 Male, age 18, unknown 11.2
1795 Male, age 51, unknown 8.7
Periaquaductal grey, dorsal
nTPM: 42.7
2850 Male, age 76, both hemispheres 82.0
1831 Male, age 72, unknown 43.0
1840 Male, age 53, unknown 29.2
2464 Female, age 72, unknown 16.5
Periaquaductal grey, lateral
nTPM: 10.4
2140 Male, age 76, both hemispheres 15.7
2272 Male, age 74, both hemispheres 12.7
2053 Male, age 18, unknown 2.7
Pretectal area
nTPM: 13.7
1816 Male, age 51, unknown 24.2
2825 Male, age 18, unknown 22.1
2407 Male, age 75, both hemispheres 17.7
2273 Male, age 74, both hemispheres 14.2
2667 Female, age 75, unknown 13.2
2224 Female, age 72, unknown 13.1
1815 Male, age 53, unknown 11.4
2007 Male, age 72, unknown 10.8
1944 Female, age 72, unknown 10.1
1817 Female, age 42, unknown 9.6
2316 Male, age 76, right hemisphere 4.2
Red nucleus
nTPM: 22.7
2769 Male, age 72, unknown 33.2
2227 Male, age 72, unknown 32.4
2503 Female, age 72, unknown 32.3
1904 Male, age 53, unknown 26.5
1821 Female, age 72, unknown 26.0
1954 Female, age 42, unknown 24.6
2588 Male, age 74, left hemisphere 21.7
2785 Male, age 18, unknown 19.3
2584 Male, age 75, left hemisphere 15.0
2823 Male, age 76, right hemisphere 14.7
2725 Female, age 75, unknown 14.6
1865 Male, age 51, unknown 12.5
Substantia nigra
nTPM: 15.1
2699 Male, age 18, unknown 33.2
1916 Female, age 42, unknown 24.4
1889 Female, age 72, unknown 24.2
2665 Male, age 74, both hemispheres 20.8
1941 Male, age 53, unknown 12.8
2590 Female, age 75, unknown 12.7
1851 Male, age 51, unknown 8.9
2583 Male, age 75, right hemisphere 7.2
2409 Female, age 72, unknown 5.3
2241 Male, age 72, unknown 1.9
Superior colliculus
nTPM: 14.6
2261 Male, age 18, unknown 23.3
1839 Male, age 51, unknown 22.1
1913 Female, age 42, unknown 19.2
2664 Male, age 75, both hemispheres 17.1
2087 Female, age 72, unknown 16.4
2668 Female, age 75, unknown 12.5
2587 Male, age 74, left hemisphere 11.1
1796 Male, age 53, unknown 10.1
1995 Male, age 72, unknown 8.3
1895 Male, age 76, right hemisphere 6.4
Ventral tegmental area
nTPM: 19.6
2218 Male, age 76, both hemispheres 48.4
1915 Female, age 42, unknown 18.6
1942 Male, age 51, unknown 17.6
2223 Female, age 72, unknown 16.8
2410 Female, age 72, unknown 8.8
2021 Male, age 53, unknown 7.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 71.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.3
Samples: 139

Max nTPM: 123.9
Min nTPM: 40.3
Std nTPM: 16.2
Median nTPM: 69.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 123.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 119.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 115.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 111.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 107.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 106.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 103.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 101.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 100.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 99.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 99.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 177.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 177.5
FF:10158-103A5 76 years, female 177.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.8
Samples: 4

Max nTPM: 40.3
Min nTPM: 32.8
Sample A Female 32.8
Sample B Female 35.1
Sample C Male 40.3
Sample D Male 35.0
Midbrain
nTPM: 37.5
Samples: 4

Max nTPM: 45.4
Min nTPM: 31.8
Sample A Female 45.4
Sample B Female 40.1
Sample C Male 31.8
Sample D Male 32.5
Periaqueductal gray
nTPM: 42.3
Samples: 3

Max nTPM: 45.5
Min nTPM: 40.5
Sample B Female 40.5
Sample C Male 45.5
Sample D Male 40.8
Superior colliculi
nTPM: 32.5
Samples: 4

Max nTPM: 35.2
Min nTPM: 25.7
Sample A Female 34.2
Sample B Female 25.7
Sample C Male 34.7
Sample D Male 35.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.5
Samples: 4

Max nTPM: 29.9
Min nTPM: 24.4
Sample A Male 26.8
Sample B Male 24.4
Sample C Female 29.9
Sample D Female 28.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.6
69980154 Antisense, RP_050512_04_A03, Mouse strain C57BL/6J (56 days, male) 7.6

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