MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.3 nTPM
HPA Brain:38.4 nTPM
GTEx:1.3 nTPM
FANTOM5:13.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.3
2219 Male, age 76, both hemispheres 66.8
1827 Male, age 72, unknown 27.9
1830 Male, age 51, unknown 26.1
1870 Female, age 42, unknown 25.9
1833 Male, age 53, unknown 24.8
2411 Female, age 72, unknown 24.3
2019 Male, age 18, unknown 23.5
2666 Male, age 74, left hemisphere 21.6
2828 Female, age 72, unknown 20.5
2586 Male, age 75, left hemisphere 11.7
Dorsal raphe nucleus
nTPM: 26.5
2298 Female, age 72, unknown 45.7
2016 Female, age 72, unknown 26.5
1828 Male, age 53, unknown 21.2
2750 Male, age 76, both hemispheres 20.4
2047 Male, age 72, unknown 18.5
Inferior colliculus
nTPM: 33.9
2097 Female, age 72, unknown 37.5
1890 Male, age 53, unknown 35.7
2849 Male, age 72, unknown 32.8
1848 Female, age 42, unknown 29.7
Median raphe nucleus
nTPM: 23.2
2220 Male, age 76, midline 23.2
Periaquaductal grey, anterior
nTPM: 29.6
2502 Female, age 75, unknown 33.8
1795 Male, age 51, unknown 27.5
1947 Male, age 18, unknown 27.4
Periaquaductal grey, dorsal
nTPM: 32.1
2850 Male, age 76, both hemispheres 40.3
1831 Male, age 72, unknown 36.4
1840 Male, age 53, unknown 29.2
2464 Female, age 72, unknown 22.5
Periaquaductal grey, lateral
nTPM: 38.4
2272 Male, age 74, both hemispheres 53.0
2140 Male, age 76, both hemispheres 31.7
2053 Male, age 18, unknown 30.4
Pretectal area
nTPM: 30.5
2273 Male, age 74, both hemispheres 41.0
2224 Female, age 72, unknown 38.5
2407 Male, age 75, both hemispheres 36.3
1816 Male, age 51, unknown 33.8
2316 Male, age 76, right hemisphere 33.2
1944 Female, age 72, unknown 30.6
2667 Female, age 75, unknown 27.9
2825 Male, age 18, unknown 26.4
1815 Male, age 53, unknown 24.1
2007 Male, age 72, unknown 23.2
1817 Female, age 42, unknown 20.8
Red nucleus
nTPM: 25.1
2725 Female, age 75, unknown 30.9
2227 Male, age 72, unknown 29.9
2503 Female, age 72, unknown 29.8
1865 Male, age 51, unknown 28.3
2769 Male, age 72, unknown 27.7
1904 Male, age 53, unknown 27.2
2584 Male, age 75, left hemisphere 26.1
2823 Male, age 76, right hemisphere 24.2
1954 Female, age 42, unknown 23.7
2785 Male, age 18, unknown 23.5
1821 Female, age 72, unknown 18.7
2588 Male, age 74, left hemisphere 10.7
Substantia nigra
nTPM: 26.6
2665 Male, age 74, both hemispheres 36.3
2699 Male, age 18, unknown 34.6
1916 Female, age 42, unknown 31.8
1889 Female, age 72, unknown 26.9
2241 Male, age 72, unknown 26.6
2583 Male, age 75, right hemisphere 25.5
1941 Male, age 53, unknown 25.3
2590 Female, age 75, unknown 23.9
1851 Male, age 51, unknown 23.1
2409 Female, age 72, unknown 11.7
Superior colliculus
nTPM: 30.9
1796 Male, age 53, unknown 40.5
2261 Male, age 18, unknown 36.7
2587 Male, age 74, left hemisphere 36.3
2087 Female, age 72, unknown 34.6
1913 Female, age 42, unknown 34.3
1995 Male, age 72, unknown 28.8
1895 Male, age 76, right hemisphere 27.5
1839 Male, age 51, unknown 23.8
2668 Female, age 75, unknown 23.8
2664 Male, age 75, both hemispheres 23.1
Ventral tegmental area
nTPM: 32.8
2223 Female, age 72, unknown 37.3
1942 Male, age 51, unknown 35.8
2021 Male, age 53, unknown 33.0
1915 Female, age 42, unknown 31.8
2410 Female, age 72, unknown 30.8
2218 Male, age 76, both hemispheres 27.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.3
Samples: 139

Max nTPM: 7.4
Min nTPM: 0.1
Std nTPM: 1.1
Median nTPM: 1.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 7.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 5.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 4.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 4.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 4.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 4.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 4.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 4.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 3.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 3.3
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 3.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.3
FF:10158-103A5 76 years, female 13.3

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