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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
23.9
nTPM
FANTOM5:
93.6
Scaled Tags Per Million
CAUDATE - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA040981
Glial cells
Not detected
Neuronal cells
Medium
BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM
23.9
Sample id
Sample description
nTPM
Caudate nucleus nTPM: 21.8
2481
Female, age 94, left hemisphere
25.8
1857
Female, age 85, left hemisphere
25.3
2288
Male, age 75, left hemisphere
23.3
2846
Female, age 79, unknown
22.0
1854
Male, age 80, left hemisphere
21.1
2290
Female, age 72, unknown
20.7
1781
Male, age 74, unknown
18.4
2289
Male, age 61, right hemisphere
17.4
Globus pallidus, externus nTPM: 18.4
2772
Female, age 79, unknown
25.9
2395
Male, age 75, both hemispheres
22.0
1996
Male, age 80, right hemisphere
19.9
2646
Male, age 61, right hemisphere
13.3
2567
Female, age 72, unknown
11.0
Globus pallidus, internus nTPM: 21.6
2287
Male, age 75, right hemisphere
35.1
2483
Female, age 94, right hemisphere
26.6
2778
Female, age 91, both hemispheres
24.0
1818
Male, age 74, unknown
19.2
2037
Male, age 80, right hemisphere
16.8
2111
Female, age 85, right hemisphere
15.7
2566
Female, age 72, unknown
13.6
Nucleus accumbens nTPM: 22.7
1856
Female, age 91, right hemisphere
28.6
2286
Male, age 75, left hemisphere
25.7
2698
Female, age 72, unknown
23.4
2824
Male, age 61, right hemisphere
23.1
1806
Female, age 85, left hemisphere
22.5
2391
Female, age 94, left hemisphere
21.1
1783
Male, age 74, unknown
19.9
2732
Male, age 80, right hemisphere
17.2
Nucleus basalis of Meynert nTPM: 18.8
2821
Male, age 75, both hemispheres
23.0
2484
Female, age 94, left hemisphere
21.8
2393
Male, age 80, right hemisphere
18.5
2569
Male, age 61, both hemispheres
12.0
Nucleus of the diagonal band nTPM: 22.7
1812
Female, age 91, both hemispheres
25.1
2195
Female, age 85, both hemispheres
24.4
2775
Male, age 80, right hemisphere
23.8
1979
Male, age 74, unknown
21.5
2029
Male, age 61, right hemisphere
18.7
Putamen nTPM: 19.8
2482
Female, age 94, left hemisphere
24.7
2466
Female, age 79, unknown
24.2
1937
Female, age 91, right hemisphere
23.3
1838
Male, age 80, right hemisphere
19.3
1829
Male, age 74, unknown
18.2
2647
Male, age 75, left hemisphere
16.5
2489
Female, age 72, unknown
12.2
Septal nuclei nTPM: 21.0
2031
Female, age 72, unknown
26.1
1960
Male, age 74, unknown
23.2
2629
Female, age 94, right hemisphere
21.4
2009
Female, age 91, both hemispheres
20.8
2059
Female, age 85, both hemispheres
19.9
2199
Male, age 80, right hemisphere
17.8
2394
Male, age 61, left hemisphere
17.8
Stria terminalis, bed nucleus nTPM: 23.9
2201
Male, age 74, unknown
24.5
2486
Female, age 94, both hemispheres
24.0
1974
Female, age 91, both hemispheres
23.2
BASAL GANGLIA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
The Human Protein Atlas project is funded
