We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
23.2
nTPM
FANTOM5:
67.9
Scaled Tags Per Million
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
23.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 17.7
1870
Female, age 42, unknown
23.2
2411
Female, age 72, unknown
22.8
1827
Male, age 72, unknown
22.4
2219
Male, age 76, both hemispheres
19.2
1833
Male, age 53, unknown
17.8
1830
Male, age 51, unknown
17.4
2019
Male, age 18, unknown
17.3
2828
Female, age 72, unknown
15.2
2586
Male, age 75, left hemisphere
11.6
2666
Male, age 74, left hemisphere
10.1
Dorsal raphe nucleus nTPM: 19.6
2298
Female, age 72, unknown
24.8
2750
Male, age 76, both hemispheres
23.0
2047
Male, age 72, unknown
18.3
1828
Male, age 53, unknown
16.6
2016
Female, age 72, unknown
15.2
Inferior colliculus nTPM: 19.7
2097
Female, age 72, unknown
22.4
1848
Female, age 42, unknown
21.3
2849
Male, age 72, unknown
18.2
1890
Male, age 53, unknown
16.8
Median raphe nucleus nTPM: 23.2
2220
Male, age 76, midline
23.2
Periaquaductal grey, anterior nTPM: 21.6
1947
Male, age 18, unknown
24.3
2502
Female, age 75, unknown
21.0
1795
Male, age 51, unknown
19.4
Periaquaductal grey, dorsal nTPM: 18.1
1840
Male, age 53, unknown
21.0
2464
Female, age 72, unknown
18.8
2850
Male, age 76, both hemispheres
17.4
1831
Male, age 72, unknown
15.1
Periaquaductal grey, lateral nTPM: 20.8
2272
Male, age 74, both hemispheres
24.0
2053
Male, age 18, unknown
19.4
2140
Male, age 76, both hemispheres
18.9
Pretectal area nTPM: 20.7
2224
Female, age 72, unknown
25.1
2273
Male, age 74, both hemispheres
24.9
2667
Female, age 75, unknown
23.9
2825
Male, age 18, unknown
21.3
2007
Male, age 72, unknown
21.1
1817
Female, age 42, unknown
20.7
1944
Female, age 72, unknown
20.4
1815
Male, age 53, unknown
20.0
1816
Male, age 51, unknown
19.6
2316
Male, age 76, right hemisphere
16.7
2407
Male, age 75, both hemispheres
14.2
Red nucleus nTPM: 18.0
1821
Female, age 72, unknown
22.3
2725
Female, age 75, unknown
21.2
1904
Male, age 53, unknown
20.0
2503
Female, age 72, unknown
19.7
1954
Female, age 42, unknown
19.6
1865
Male, age 51, unknown
18.2
2769
Male, age 72, unknown
17.6
2588
Male, age 74, left hemisphere
16.9
2227
Male, age 72, unknown
16.5
2823
Male, age 76, right hemisphere
15.9
2785
Male, age 18, unknown
15.0
2584
Male, age 75, left hemisphere
12.7
Substantia nigra nTPM: 17.2
2241
Male, age 72, unknown
24.4
1889
Female, age 72, unknown
21.6
1916
Female, age 42, unknown
21.2
1851
Male, age 51, unknown
19.2
1941
Male, age 53, unknown
17.5
2699
Male, age 18, unknown
15.6
2409
Female, age 72, unknown
14.4
2583
Male, age 75, right hemisphere
13.8
2665
Male, age 74, both hemispheres
12.4
2590
Female, age 75, unknown
11.6
Superior colliculus nTPM: 18.2
1796
Male, age 53, unknown
22.7
2587
Male, age 74, left hemisphere
21.3
1895
Male, age 76, right hemisphere
20.7
2261
Male, age 18, unknown
20.3
2087
Female, age 72, unknown
20.0
2668
Female, age 75, unknown
18.8
1839
Male, age 51, unknown
18.3
1913
Female, age 42, unknown
16.0
1995
Male, age 72, unknown
13.3
2664
Male, age 75, both hemispheres
11.1
Ventral tegmental area nTPM: 20.6
2410
Female, age 72, unknown
26.1
2223
Female, age 72, unknown
22.3
1915
Female, age 42, unknown
20.3
2218
Male, age 76, both hemispheres
20.3
1942
Male, age 51, unknown
19.3
2021
Male, age 53, unknown
15.5
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
The Human Protein Atlas project is funded
