MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:811.5 nTPM
HPA Brain:409.5 nTPM
GTEx:811.5 nTPM
FANTOM5:24.7 Scaled Tags Per Million
Pig:856.7 nTPM
Mouse:463.9 nTPM
Allen mouse:17.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 409.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 344.2
2586 Male, age 75, left hemisphere 452.4
2666 Male, age 74, left hemisphere 394.1
1870 Female, age 42, unknown 358.2
2411 Female, age 72, unknown 348.3
1827 Male, age 72, unknown 334.2
2219 Male, age 76, both hemispheres 330.4
1833 Male, age 53, unknown 323.5
1830 Male, age 51, unknown 311.7
2828 Female, age 72, unknown 302.4
2019 Male, age 18, unknown 286.8
Dorsal raphe nucleus
nTPM: 336.5
2298 Female, age 72, unknown 345.8
2750 Male, age 76, both hemispheres 342.8
2016 Female, age 72, unknown 335.8
1828 Male, age 53, unknown 329.5
2047 Male, age 72, unknown 328.8
Inferior colliculus
nTPM: 337.7
1890 Male, age 53, unknown 348.4
2849 Male, age 72, unknown 338.1
1848 Female, age 42, unknown 333.5
2097 Female, age 72, unknown 330.8
Median raphe nucleus
nTPM: 342.3
2220 Male, age 76, midline 342.3
Periaquaductal grey, anterior
nTPM: 339.6
2502 Female, age 75, unknown 360.6
1947 Male, age 18, unknown 345.9
1795 Male, age 51, unknown 312.3
Periaquaductal grey, dorsal
nTPM: 314.9
1840 Male, age 53, unknown 371.3
2464 Female, age 72, unknown 329.2
1831 Male, age 72, unknown 305.6
2850 Male, age 76, both hemispheres 253.4
Periaquaductal grey, lateral
nTPM: 269.1
2053 Male, age 18, unknown 320.4
2272 Male, age 74, both hemispheres 254.8
2140 Male, age 76, both hemispheres 232.1
Pretectal area
nTPM: 303.5
2825 Male, age 18, unknown 331.2
2407 Male, age 75, both hemispheres 328.6
1816 Male, age 51, unknown 311.7
2224 Female, age 72, unknown 310.0
1817 Female, age 42, unknown 309.1
2007 Male, age 72, unknown 308.2
1815 Male, age 53, unknown 307.0
1944 Female, age 72, unknown 306.5
2316 Male, age 76, right hemisphere 288.5
2667 Female, age 75, unknown 273.5
2273 Male, age 74, both hemispheres 264.2
Red nucleus
nTPM: 335.6
2584 Male, age 75, left hemisphere 389.3
2503 Female, age 72, unknown 385.0
1821 Female, age 72, unknown 378.0
1865 Male, age 51, unknown 366.4
2588 Male, age 74, left hemisphere 338.0
1904 Male, age 53, unknown 329.5
2227 Male, age 72, unknown 329.2
2769 Male, age 72, unknown 327.1
2725 Female, age 75, unknown 321.3
2785 Male, age 18, unknown 297.3
1954 Female, age 42, unknown 292.4
2823 Male, age 76, right hemisphere 273.8
Substantia nigra
nTPM: 409.5
2241 Male, age 72, unknown 482.1
1851 Male, age 51, unknown 455.2
1916 Female, age 42, unknown 451.4
2665 Male, age 74, both hemispheres 436.6
2699 Male, age 18, unknown 432.0
2409 Female, age 72, unknown 406.0
2590 Female, age 75, unknown 378.6
2583 Male, age 75, right hemisphere 370.7
1941 Male, age 53, unknown 350.1
1889 Female, age 72, unknown 332.3
Superior colliculus
nTPM: 325.8
2668 Female, age 75, unknown 376.8
2587 Male, age 74, left hemisphere 359.5
2664 Male, age 75, both hemispheres 352.3
1796 Male, age 53, unknown 332.8
1839 Male, age 51, unknown 325.6
1895 Male, age 76, right hemisphere 325.3
2261 Male, age 18, unknown 304.4
1913 Female, age 42, unknown 303.4
1995 Male, age 72, unknown 296.2
2087 Female, age 72, unknown 281.9
Ventral tegmental area
nTPM: 364.5
1915 Female, age 42, unknown 420.3
2223 Female, age 72, unknown 380.8
2021 Male, age 53, unknown 361.0
2410 Female, age 72, unknown 346.6
1942 Male, age 51, unknown 340.3
2218 Male, age 76, both hemispheres 337.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 811.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 811.5
Samples: 139

Max nTPM: 2056.9
Min nTPM: 441.9
Std nTPM: 237.0
Median nTPM: 769.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2056.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1566.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1515.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1471.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1324.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1314.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1290.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1215.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1160.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1152.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1151.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.7
FF:10158-103A5 76 years, female 24.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 856.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 847.2
Samples: 4

Max nTPM: 1018.9
Min nTPM: 700.6
Sample A Female 1018.9
Sample B Female 915.1
Sample C Male 754.1
Sample D Male 700.6
Midbrain
nTPM: 824.2
Samples: 4

Max nTPM: 1045.2
Min nTPM: 669.8
Sample A Female 1045.2
Sample B Female 887.8
Sample C Male 693.9
Sample D Male 669.8
Periaqueductal gray
nTPM: 701.9
Samples: 3

Max nTPM: 733.4
Min nTPM: 649.4
Sample B Female 733.4
Sample C Male 723.0
Sample D Male 649.4
Superior colliculi
nTPM: 856.7
Samples: 4

Max nTPM: 979.9
Min nTPM: 764.5
Sample A Female 979.9
Sample B Female 911.3
Sample C Male 771.1
Sample D Male 764.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 463.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 463.9
Samples: 4

Max nTPM: 497.1
Min nTPM: 424.6
Sample A Male 497.1
Sample B Male 458.5
Sample C Female 424.6
Sample D Female 475.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.8
69818317 Antisense, RP_050510_04_H04, Mouse strain C57BL/6J (56 days, male) 17.8

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