MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:205.2 nTPM
HPA Brain:357.5 nTPM
GTEx:205.2 nTPM
FANTOM5:24.0 Scaled Tags Per Million
Pig:566.6 nTPM
Mouse:447.4 nTPM
Allen mouse:17.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 357.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 187.1
2219 Male, age 76, both hemispheres 297.2
1827 Male, age 72, unknown 240.6
2666 Male, age 74, left hemisphere 238.0
2411 Female, age 72, unknown 211.0
2828 Female, age 72, unknown 173.2
2019 Male, age 18, unknown 166.0
1870 Female, age 42, unknown 161.3
1833 Male, age 53, unknown 135.5
1830 Male, age 51, unknown 127.8
2586 Male, age 75, left hemisphere 120.6
Dorsal raphe nucleus
nTPM: 230.7
2298 Female, age 72, unknown 298.9
2750 Male, age 76, both hemispheres 268.4
2047 Male, age 72, unknown 243.6
1828 Male, age 53, unknown 222.3
2016 Female, age 72, unknown 120.1
Inferior colliculus
nTPM: 144.4
2097 Female, age 72, unknown 156.4
1848 Female, age 42, unknown 153.4
2849 Male, age 72, unknown 140.8
1890 Male, age 53, unknown 127.1
Median raphe nucleus
nTPM: 357.5
2220 Male, age 76, midline 357.5
Periaquaductal grey, anterior
nTPM: 182.9
1795 Male, age 51, unknown 201.6
1947 Male, age 18, unknown 192.9
2502 Female, age 75, unknown 154.2
Periaquaductal grey, dorsal
nTPM: 146.6
2850 Male, age 76, both hemispheres 178.3
1840 Male, age 53, unknown 160.9
1831 Male, age 72, unknown 124.3
2464 Female, age 72, unknown 123.0
Periaquaductal grey, lateral
nTPM: 121.2
2053 Male, age 18, unknown 125.2
2140 Male, age 76, both hemispheres 120.5
2272 Male, age 74, both hemispheres 117.9
Pretectal area
nTPM: 207.2
1944 Female, age 72, unknown 316.8
1816 Male, age 51, unknown 291.9
2007 Male, age 72, unknown 272.6
1817 Female, age 42, unknown 265.3
2224 Female, age 72, unknown 247.1
1815 Male, age 53, unknown 216.8
2825 Male, age 18, unknown 173.9
2667 Female, age 75, unknown 157.6
2407 Male, age 75, both hemispheres 140.7
2316 Male, age 76, right hemisphere 108.8
2273 Male, age 74, both hemispheres 87.3
Red nucleus
nTPM: 121.2
1821 Female, age 72, unknown 180.0
2584 Male, age 75, left hemisphere 152.7
2785 Male, age 18, unknown 148.9
2823 Male, age 76, right hemisphere 131.0
1954 Female, age 42, unknown 130.9
1865 Male, age 51, unknown 119.5
2227 Male, age 72, unknown 113.0
2769 Male, age 72, unknown 112.5
2725 Female, age 75, unknown 107.6
1904 Male, age 53, unknown 98.5
2503 Female, age 72, unknown 80.5
2588 Male, age 74, left hemisphere 79.7
Substantia nigra
nTPM: 255.5
1916 Female, age 42, unknown 430.4
1941 Male, age 53, unknown 338.3
2665 Male, age 74, both hemispheres 289.8
2241 Male, age 72, unknown 285.8
1851 Male, age 51, unknown 264.3
2409 Female, age 72, unknown 264.1
1889 Female, age 72, unknown 251.8
2699 Male, age 18, unknown 182.5
2590 Female, age 75, unknown 136.0
2583 Male, age 75, right hemisphere 112.1
Superior colliculus
nTPM: 173.8
2668 Female, age 75, unknown 424.9
2087 Female, age 72, unknown 224.9
1796 Male, age 53, unknown 199.9
1895 Male, age 76, right hemisphere 176.1
2261 Male, age 18, unknown 174.0
1839 Male, age 51, unknown 145.2
1913 Female, age 42, unknown 119.7
2664 Male, age 75, both hemispheres 99.8
2587 Male, age 74, left hemisphere 93.6
1995 Male, age 72, unknown 79.6
Ventral tegmental area
nTPM: 227.1
2218 Male, age 76, both hemispheres 336.8
2410 Female, age 72, unknown 268.6
1915 Female, age 42, unknown 268.0
1942 Male, age 51, unknown 171.0
2021 Male, age 53, unknown 167.7
2223 Female, age 72, unknown 150.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 205.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 205.2
Samples: 139

Max nTPM: 1111.9
Min nTPM: 3.3
Std nTPM: 211.3
Median nTPM: 134.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1111.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 974.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 911.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 866.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 759.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 707.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 638.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 626.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 506.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 490.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 484.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.0
FF:10158-103A5 76 years, female 24.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 566.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 566.6
Samples: 4

Max nTPM: 1029.2
Min nTPM: 133.2
Sample A Female 1029.2
Sample B Female 366.7
Sample C Male 737.2
Sample D Male 133.2
Midbrain
nTPM: 480.0
Samples: 4

Max nTPM: 712.0
Min nTPM: 126.0
Sample A Female 126.0
Sample B Female 497.0
Sample C Male 712.0
Sample D Male 584.8
Periaqueductal gray
nTPM: 427.1
Samples: 3

Max nTPM: 559.6
Min nTPM: 352.6
Sample B Female 369.0
Sample C Male 559.6
Sample D Male 352.6
Superior colliculi
nTPM: 558.7
Samples: 4

Max nTPM: 816.5
Min nTPM: 276.4
Sample A Female 662.6
Sample B Female 276.4
Sample C Male 816.5
Sample D Male 479.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 447.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 447.4
Samples: 4

Max nTPM: 459.6
Min nTPM: 434.3
Sample A Male 434.3
Sample B Male 459.6
Sample C Female 437.6
Sample D Female 458.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.5
74819695 Antisense, RP_060315_02_H11, Mouse strain C57BL/6J (56 days, male) 17.6
69173415 Antisense, RP_050329_01_E10, Mouse strain C57BL/6J (56 days, male) 17.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org