MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.0 nTPM
HPA Brain:81.5 nTPM
GTEx:12.0 nTPM
FANTOM5:13.5 Scaled Tags Per Million
Pig:110.8 nTPM
Mouse:181.3 nTPM
Allen mouse:10.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 81.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.8
1827 Male, age 72, unknown 94.2
2666 Male, age 74, left hemisphere 62.3
2828 Female, age 72, unknown 60.0
2019 Male, age 18, unknown 34.9
2411 Female, age 72, unknown 34.4
1870 Female, age 42, unknown 31.4
2586 Male, age 75, left hemisphere 29.8
2219 Male, age 76, both hemispheres 24.8
1830 Male, age 51, unknown 23.5
1833 Male, age 53, unknown 22.6
Dorsal raphe nucleus
nTPM: 37.7
2298 Female, age 72, unknown 71.7
2750 Male, age 76, both hemispheres 51.5
2047 Male, age 72, unknown 25.0
2016 Female, age 72, unknown 20.9
1828 Male, age 53, unknown 19.4
Inferior colliculus
nTPM: 27.3
2097 Female, age 72, unknown 50.3
1890 Male, age 53, unknown 23.5
1848 Female, age 42, unknown 18.1
2849 Male, age 72, unknown 17.5
Median raphe nucleus
nTPM: 48.5
2220 Male, age 76, midline 48.5
Periaquaductal grey, anterior
nTPM: 81.5
1947 Male, age 18, unknown 113.7
1795 Male, age 51, unknown 77.8
2502 Female, age 75, unknown 52.9
Periaquaductal grey, dorsal
nTPM: 39.2
1831 Male, age 72, unknown 51.2
2850 Male, age 76, both hemispheres 36.1
1840 Male, age 53, unknown 35.7
2464 Female, age 72, unknown 33.8
Periaquaductal grey, lateral
nTPM: 40.1
2272 Male, age 74, both hemispheres 56.7
2053 Male, age 18, unknown 38.2
2140 Male, age 76, both hemispheres 25.2
Pretectal area
nTPM: 74.7
1816 Male, age 51, unknown 162.7
1815 Male, age 53, unknown 117.0
2007 Male, age 72, unknown 108.8
1817 Female, age 42, unknown 96.0
1944 Female, age 72, unknown 77.7
2667 Female, age 75, unknown 59.1
2273 Male, age 74, both hemispheres 56.5
2825 Male, age 18, unknown 44.8
2224 Female, age 72, unknown 44.7
2407 Male, age 75, both hemispheres 32.8
2316 Male, age 76, right hemisphere 21.6
Red nucleus
nTPM: 32.1
2785 Male, age 18, unknown 40.7
2584 Male, age 75, left hemisphere 36.9
2725 Female, age 75, unknown 36.3
1954 Female, age 42, unknown 36.1
2588 Male, age 74, left hemisphere 34.8
2823 Male, age 76, right hemisphere 33.6
1904 Male, age 53, unknown 32.7
2503 Female, age 72, unknown 31.6
1865 Male, age 51, unknown 31.0
1821 Female, age 72, unknown 28.5
2227 Male, age 72, unknown 21.5
2769 Male, age 72, unknown 20.9
Substantia nigra
nTPM: 25.7
1889 Female, age 72, unknown 77.0
2665 Male, age 74, both hemispheres 33.6
2583 Male, age 75, right hemisphere 26.1
2590 Female, age 75, unknown 25.9
1851 Male, age 51, unknown 18.6
2241 Male, age 72, unknown 17.7
2409 Female, age 72, unknown 17.0
1916 Female, age 42, unknown 16.3
1941 Male, age 53, unknown 15.0
2699 Male, age 18, unknown 9.3
Superior colliculus
nTPM: 53.9
1796 Male, age 53, unknown 94.5
2261 Male, age 18, unknown 88.4
2087 Female, age 72, unknown 78.7
2668 Female, age 75, unknown 57.1
1913 Female, age 42, unknown 54.3
1995 Male, age 72, unknown 41.7
2587 Male, age 74, left hemisphere 34.7
2664 Male, age 75, both hemispheres 33.2
1895 Male, age 76, right hemisphere 28.3
1839 Male, age 51, unknown 28.2
Ventral tegmental area
nTPM: 27.8
2218 Male, age 76, both hemispheres 37.7
1942 Male, age 51, unknown 34.0
2021 Male, age 53, unknown 32.9
2223 Female, age 72, unknown 24.4
2410 Female, age 72, unknown 21.1
1915 Female, age 42, unknown 17.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.0
Samples: 139

Max nTPM: 49.2
Min nTPM: 2.1
Std nTPM: 6.7
Median nTPM: 10.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 49.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 39.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 32.7
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 30.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 28.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 22.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 21.6
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 21.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 21.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 21.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.5
FF:10158-103A5 76 years, female 13.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 110.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 61.0
Samples: 4

Max nTPM: 77.9
Min nTPM: 52.3
Sample A Female 77.9
Sample B Female 52.3
Sample C Male 61.2
Sample D Male 52.7
Midbrain
nTPM: 110.8
Samples: 4

Max nTPM: 168.3
Min nTPM: 58.5
Sample A Female 74.9
Sample B Female 58.5
Sample C Male 141.6
Sample D Male 168.3
Periaqueductal gray
nTPM: 105.3
Samples: 3

Max nTPM: 174.5
Min nTPM: 67.9
Sample B Female 73.6
Sample C Male 174.5
Sample D Male 67.9
Superior colliculi
nTPM: 101.1
Samples: 4

Max nTPM: 166.1
Min nTPM: 55.1
Sample A Female 166.1
Sample B Female 55.1
Sample C Male 97.3
Sample D Male 85.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 181.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 181.4
Samples: 4

Max nTPM: 183.0
Min nTPM: 179.6
Sample A Male 180.5
Sample B Male 183.0
Sample C Female 179.6
Sample D Female 182.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.9
70437798 Antisense, RP_050614_02_H09, Mouse strain C57BL/6J (56 days, male) 10.9
71924321 Antisense, RP_050614_02_H09, Mouse strain C57BL/6J (56 days, male) 8.5

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