We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
NCALD
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields ยป
Search result

 
Field
All
Term
Gene name
Class
Blood group antigen proteins
Subclass
 
Class
 
Keyword
Chromosome
External id
Tissue
 
Cell type
 
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Cluster
Reliability
Cell type
Category
Cluster
Tissue
 
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Interacting gene
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Yes
Protein structure
In atlas
Column
Gene


                        • SPECIFICITY
                        • DISTRIBUTION
                        • EXPRESSION
                        • SPECIFICITY
                        • DISTRIBUTION
                        • EXPRESSION
                        • SPECIFICITY
                        • DISTRIBUTION
                        • EXPRESSION
                        • SPECIFICITY
                        • DISTRIBUTION
                        • EXPRESSION
                        • SPECIFICITY
                        • DISTRIBUTION
                        • EXPRESSION
                          • SPECIFICITY
                          • DISTRIBUTION
                          • EXPRESSION
                          • SPECIFICITY
                          • DISTRIBUTION
                          • EXPRESSION
                          • SPECIFICITY
                          • DISTRIBUTION
                          • EXPRESSION
                          • RELIABILITY
                          • SUBCELLULAR VARIATION
                          • MULTILOCALIZATION
                          • OTHER
                          • SPECIFICITY
                          • DISTRIBUTION
                          • EXPRESSION
                          • Check all
                          • Uncheck all
                                  • SUMMARY

                                  • TISSUE

                                  • BRAIN

                                  • SINGLE CELL

                                  • TISSUE CELL

                                  • PATHOLOGY

                                  • DISEASE

                                  • IMMUNE

                                  • BLOOD

                                  • SUBCELL

                                  • CELL LINE

                                  • STRUCTURE

                                  • INTERACTION

                                  • NCALD
                                  BRAIN THALAMUS Show tissue menu
                                  AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
                                  MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
                                  ANTIBODIES
                                  AND
                                  VALIDATION
                                  Brain proteome
                                  Thalamus
                                  THALAMUS - Expression summary
                                  Protein expressioni

                                  On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                  Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                  If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                  No data
                                  RNA expressioni

                                  A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                  The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                  Scroll down to view mRNA expression data in more detail.
                                  HPA Brain:115.2 nTPM
                                  FANTOM5:14.0 Scaled Tags Per Million
                                  Pig:113.8 nTPM
                                  Mouse:182.3 nTPM
                                  Allen mouse:14.7 Expression energy

                                  THALAMUS - HPA Brain RNA-seq
                                  Max nTPM 115.2
                                  Sample id Sample description nTPM
                                  Anterior thalamic nucleus, ventral
                                  nTPM: 60.1
                                  2497 Male, age 66, unknown 68.4
                                  2032 Female, age 42, unknown 59.4
                                  2396 Male, age 61, right hemisphere 52.4
                                  Centromedial thalamic nucleus
                                  nTPM: 69.7
                                  2401 Male, age 76, right hemisphere 129.3
                                  2279 Female, age 85, left hemisphere 10.2
                                  Habenula
                                  nTPM: 115.2
                                  1957 Male, age 80, both hemispheres 210.3
                                  2203 Male, age 61, left hemisphere 101.7
                                  2276 Male, age 66, unknown 83.7
                                  2252 Male, age 62, unknown 65.2
                                  Lateral geniculate body
                                  nTPM: 55.7
                                  2106 Female, age 67, right hemisphere 131.1
                                  1953 Male, age 62, unknown 74.5
                                  2399 Male, age 61, left hemisphere 60.6
                                  2857 Male, age 74, right hemisphere 49.8
                                  2035 Female, age 72, unknown 43.0
                                  2575 Female, age 94, right hemisphere 33.2
                                  2659 Male, age 66, unknown 29.5
                                  2841 Male, age 80, both hemispheres 23.5
                                  Lateral thalamic nuclei
                                  nTPM: 64.2
                                  1903 Male, age 76, left hemisphere 114.4
                                  2765 Female, age 67, both hemispheres 79.6
                                  2661 Female, age 72, unknown 60.4
                                  2573 Female, age 94, left hemisphere 39.5
                                  2577 Male, age 74, both hemispheres 27.2
                                  Medial dorsal thalamic nucleus
                                  nTPM: 95.8
                                  2283 Male, age 80, right hemisphere 167.3
                                  2498 Male, age 66, unknown 143.0
                                  2402 Female, age 67, both hemispheres 140.5
                                  1859 Male, age 76, both hemispheres 124.0
                                  1971 Male, age 61, right hemisphere 119.1
                                  2492 Male, age 75, right hemisphere 99.2
                                  2026 Male, age 62, unknown 95.3
                                  1930 Female, age 42, unknown 83.6
                                  1810 Male, age 48, unknown 69.2
                                  2660 Female, age 72, unknown 59.2
                                  2576 Male, age 74, both hemispheres 54.2
                                  2572 Female, age 94, right hemisphere 45.6
                                  2039 Female, age 72, unknown 45.1
                                  Medial geniculate body
                                  nTPM: 65.6
                                  1811 Female, age 42, unknown 114.0
                                  2207 Male, age 80, right hemisphere 103.2
                                  2217 Female, age 72, unknown 65.7
                                  2657 Male, age 74, right hemisphere 59.8
                                  2650 Female, age 94, left hemisphere 53.9
                                  2049 Male, age 76, both hemispheres 32.8
                                  2571 Male, age 75, right hemisphere 29.8
                                  Nucleus reuniens
                                  nTPM: 56.3
                                  2212 Female, age 67, left hemisphere 103.8
                                  2205 Male, age 80, left hemisphere 45.5
                                  2210 Female, age 85, left hemisphere 19.7
                                  Nucleus rhomboideus
                                  nTPM: 59.4
                                  2206 Male, age 80, both hemispheres 123.5
                                  2213 Female, age 67, left hemisphere 42.6
                                  2280 Female, age 85, left hemisphere 12.1
                                  Posterior thalamic nucleus
                                  nTPM: 85.3
                                  2495 Female, age 67, right hemisphere 139.3
                                  2266 Male, age 76, right hemisphere 106.9
                                  2655 Male, age 74, right hemisphere 64.3
                                  2649 Female, age 94, both hemispheres 30.8
                                  Pulvinar
                                  nTPM: 90.5
                                  2496 Female, age 67, right hemisphere 181.3
                                  2214 Male, age 76, right hemisphere 123.3
                                  1972 Male, age 62, unknown 83.0
                                  1929 Male, age 48, unknown 81.5
                                  2582 Female, age 72, unknown 81.3
                                  1899 Female, age 42, unknown 80.4
                                  2499 Male, age 66, unknown 73.0
                                  2398 Male, age 61, left hemisphere 70.9
                                  2724 Male, age 74, right hemisphere 69.2
                                  1932 Male, age 80, right hemisphere 61.2
                                  Subthalamic nucleus
                                  nTPM: 26.1
                                  2406 Female, age 72, unknown 47.1
                                  2275 Male, age 66, unknown 28.9
                                  2779 Female, age 42, unknown 28.3
                                  2124 Male, age 62, unknown 22.5
                                  2658 Male, age 74, both hemispheres 21.6
                                  2216 Male, age 48, unknown 21.1
                                  2056 Female, age 72, unknown 19.9
                                  2282 Male, age 61, both hemispheres 19.4
                                  Ventral posterolateral thalamic nucleus
                                  nTPM: 58.9
                                  2197 Male, age 80, both hemispheres 128.9
                                  2740 Male, age 76, right hemisphere 68.4
                                  2397 Male, age 61, right hemisphere 51.8
                                  2570 Male, age 75, right hemisphere 37.7
                                  2578 Male, age 74, both hemispheres 35.5
                                  2581 Female, age 72, unknown 31.2
                                  Ventral posteromedial thalamic nucleus
                                  nTPM: 86.5
                                  2758 Male, age 80, both hemispheres 134.6
                                  2127 Male, age 76, right hemisphere 122.9
                                  2202 Male, age 61, left hemisphere 105.6
                                  2281 Male, age 75, right hemisphere 39.8
                                  2653 Male, age 74, both hemispheres 29.5
                                  Ventral thalamic nuclei
                                  nTPM: 57.8
                                  1912 Female, age 42, unknown 89.9
                                  1860 Male, age 76, both hemispheres 89.2
                                  1845 Male, age 48, unknown 81.1
                                  2285 Male, age 62, unknown 73.9
                                  2204 Male, age 80, both hemispheres 68.3
                                  2291 Female, age 72, unknown 33.4
                                  2858 Female, age 72, unknown 32.1
                                  2580 Male, age 66, unknown 29.0
                                  2652 Male, age 74, left hemisphere 23.6
                                  Zona incerta
                                  nTPM: 40.3
                                  2208 Male, age 80, right hemisphere 90.1
                                  2663 Female, age 72, unknown 45.0
                                  2215 Male, age 66, unknown 22.5
                                  2403 Male, age 62, unknown 22.3
                                  2822 Male, age 74, right hemisphere 21.6

                                  THALAMUS - FANTOM5 CAGEi

                                  RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                  Max Scaled Tags Per Million 14.0
                                  FANTOM5 sample id Sample description Scaled Tags Per Million
                                  Thalamus
                                  Scaled Tags Per Million: 14.0
                                  FF:10154-103A1 76 years, female 14.0

                                  THALAMUS - Pig RNA-seqi

                                  RNA-seq data obtained from pig brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 113.8
                                  Pig sample Sample description nTPM
                                  89.2113.7138.484.9143.0020406080100120140
                                  89.2113.7138.484.9143.0020406080100120140
                                  Thalamus
                                  nTPM: 113.8
                                  Samples: 4

                                  Max nTPM: 143.0
                                  Min nTPM: 84.9
                                  Sample A Female 143.0
                                  Sample B Female 90.6
                                  Sample C Male 136.8
                                  Sample D Male 84.9

                                  THALAMUS - Mouse RNA-seqi

                                  RNA-seq data obtained from mouse brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 182.3
                                  Mouse sample Sample description nTPM
                                  171.7183.4194.1162.6199.7020406080100120140160180
                                  171.7183.4194.1162.6199.7020406080100120140160180
                                  Thalamus
                                  nTPM: 182.3
                                  Samples: 4

                                  Max nTPM: 199.7
                                  Min nTPM: 162.6
                                  Sample A Male 162.6
                                  Sample B Male 199.7
                                  Sample C Female 174.7
                                  Sample D Female 192.2

                                  THALAMUS - Allen Mouse ISHi

                                  In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

                                  Max Expression energy 14.7
                                  Allen experiment id Experiment description Expression energy
                                  Thalamus
                                  Expression energy: 14.7
                                  70437798 Antisense, RP_050614_02_H09, Mouse strain C57BL/6J (56 days, male) 14.7
                                  71924321 Antisense, RP_050614_02_H09, Mouse strain C57BL/6J (56 days, male) 10.7

                                  Contact

                                  • NEWS ARTICLES
                                  • PRESS ROOM

                                  The Project

                                  • INTRODUCTION
                                  • ORGANIZATION
                                  • PUBLICATIONS

                                  The Human Protein Atlas

                                  • DOWNLOADABLE DATA
                                  • LICENCE & CITATION
                                  • HELP & FAQ
                                  The Human Protein Atlas project is funded
                                  by the Knut & Alice Wallenberg Foundation.


                                  contact@proteinatlas.org