HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:73.4 nTPM
HPA Brain:56.4 nTPM
GTEx:73.4 nTPM
FANTOM5:67.7 Scaled Tags Per Million
Pig:60.3 nTPM
Mouse:110.3 nTPM
Allen mouse:5.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA056309
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 56.4
Sample id Sample description nTPM
Hippocampus
nTPM: 55.1
1898 Male, age 80, left hemisphere 61.7
2148 Female, age 91, left hemisphere 58.3
1855 Male, age 76, left hemisphere 55.4
2621 Female, age 67, right hemisphere 54.4
2529 Female, age 94, left hemisphere 54.2
1911 Female, age 85, right hemisphere 46.4
Dentate gyrus
nTPM: 54.0
2530 Female, age 94, left hemisphere 70.3
2531 Female, age 67, both hemispheres 59.0
2010 Male, age 76, both hemispheres 51.9
2246 Female, age 85, both hemispheres 50.2
1927 Female, age 91, both hemispheres 48.8
2528 Male, age 74, both hemispheres 44.1
Entorhinal gyrus
nTPM: 54.6
2764 Male, age 80, right hemisphere 63.0
1938 Female, age 85, left hemisphere 55.5
1787 Male, age 76, left hemisphere 53.2
2613 Female, age 94, left hemisphere 52.6
2686 Male, age 75, right hemisphere 52.3
2117 Female, age 91, right hemisphere 50.9
Hippocampus, CA1
nTPM: 52.8
2749 Male, age 80, left hemisphere 70.0
1873 Female, age 85, both hemispheres 58.2
2527 Male, age 74, both hemispheres 52.3
2045 Male, age 76, both hemispheres 44.8
2082 Female, age 91, right hemisphere 38.7
Hippocampus, CA2
nTPM: 51.0
1963 Male, age 80, left hemisphere 61.8
2437 Female, age 94, left hemisphere 57.2
1892 Male, age 76, both hemispheres 56.3
1940 Female, age 85, left hemisphere 47.9
2113 Female, age 91, right hemisphere 41.4
2249 Male, age 74, both hemispheres 41.2
Hippocampus, CA3
nTPM: 56.4
2137 Male, age 80, left hemisphere 70.5
2620 Female, age 94, left hemisphere 65.4
2861 Female, age 67, both hemispheres 57.4
1867 Male, age 76, both hemispheres 53.6
1891 Female, age 85, both hemispheres 47.0
2436 Male, age 74, both hemispheres 44.4
Parahippocampal cortex
nTPM: 49.2
2532 Female, age 72, left hemisphere 59.2
2245 Female, age 91, both hemispheres 54.8
1850 Male, age 80, both hemispheres 54.1
2692 Male, age 74, both hemispheres 51.5
1933 Female, age 85, both hemispheres 50.1
2622 Female, age 67, right hemisphere 49.8
1990 Female, age 91, right hemisphere 47.4
2018 Male, age 76, both hemispheres 43.3
2693 Female, age 94, both hemispheres 42.2
2250 Female, age 67, right hemisphere 39.9
Perirhinal gyrus
nTPM: 51.5
1794 Male, age 80, right hemisphere 62.9
1847 Female, age 91, left hemisphere 52.4
2521 Female, age 94, right hemisphere 51.7
1841 Female, age 85, right hemisphere 47.2
2848 Male, age 76, right hemisphere 43.4
Subiculum
nTPM: 52.2
1901 Male, age 80, both hemispheres 59.7
2438 Female, age 94, left hemisphere 54.6
1977 Female, age 85, both hemispheres 53.5
2619 Male, age 74, both hemispheres 51.4
2042 Male, age 76, both hemispheres 50.5
2729 Female, age 91, right hemisphere 43.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 73.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 73.4
Samples: 197

Max nTPM: 134.0
Min nTPM: 35.9
Std nTPM: 15.3
Median nTPM: 72.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 134.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 110.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 109.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 105.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 104.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 103.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 101.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 100.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 100.9
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 100.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 99.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 67.7
FF:10169-103B7 60 years, female 82.0
FF:10153-102I9 76 years, female 53.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 60.3
Pig sample Sample description nTPM
Subiculum
nTPM: 52.9
Samples: 4

Max nTPM: 66.6
Min nTPM: 45.5
Sample A Female 66.6
Sample B Female 49.8
Sample C Male 49.5
Sample D Male 45.5
Dorsal hippocampus
nTPM: 60.3
Samples: 4

Max nTPM: 78.6
Min nTPM: 48.5
Sample A Female 78.6
Sample B Female 61.4
Sample C Male 52.8
Sample D Male 48.5
Entorhinal cortex
nTPM: 54.8
Samples: 4

Max nTPM: 62.6
Min nTPM: 51.6
Sample A Female 62.6
Sample B Female 51.8
Sample C Male 53.0
Sample D Male 51.6
Ventral hippocampus
nTPM: 56.8
Samples: 4

Max nTPM: 70.0
Min nTPM: 40.9
Sample A Female 60.2
Sample B Female 40.9
Sample C Male 70.0
Sample D Male 56.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 110.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 110.3
Samples: 4

Max nTPM: 111.6
Min nTPM: 108.1
Sample A Male 110.1
Sample B Male 111.2
Sample C Female 108.1
Sample D Female 111.6
Hippocampal formation
nTPM: 105.2
Samples: 4

Max nTPM: 112.8
Min nTPM: 99.1
Sample A Male 99.1
Sample B Male 103.4
Sample C Female 105.6
Sample D Female 112.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.1
68076557 Antisense, RP_040923_02_G06, Mouse strain C57BL/6J (56 days, male) 5.1

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