MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:69.9 nTPM
HPA Brain:62.6 nTPM
GTEx:69.9 nTPM
FANTOM5:68.7 Scaled Tags Per Million
Pig:56.7 nTPM
Mouse:72.3 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.8
2586 Male, age 75, left hemisphere 88.4
1870 Female, age 42, unknown 60.1
1830 Male, age 51, unknown 59.1
2828 Female, age 72, unknown 57.7
1833 Male, age 53, unknown 57.1
2019 Male, age 18, unknown 56.3
2666 Male, age 74, left hemisphere 54.2
1827 Male, age 72, unknown 52.3
2411 Female, age 72, unknown 52.0
2219 Male, age 76, both hemispheres 41.0
Dorsal raphe nucleus
nTPM: 46.7
2750 Male, age 76, both hemispheres 55.8
2047 Male, age 72, unknown 47.1
1828 Male, age 53, unknown 45.1
2016 Female, age 72, unknown 44.6
2298 Female, age 72, unknown 41.0
Inferior colliculus
nTPM: 44.8
1890 Male, age 53, unknown 48.0
1848 Female, age 42, unknown 47.8
2849 Male, age 72, unknown 42.9
2097 Female, age 72, unknown 40.6
Median raphe nucleus
nTPM: 48.8
2220 Male, age 76, midline 48.8
Periaquaductal grey, anterior
nTPM: 52.4
2502 Female, age 75, unknown 55.6
1947 Male, age 18, unknown 51.6
1795 Male, age 51, unknown 50.0
Periaquaductal grey, dorsal
nTPM: 43.0
1831 Male, age 72, unknown 45.5
1840 Male, age 53, unknown 43.1
2850 Male, age 76, both hemispheres 42.6
2464 Female, age 72, unknown 40.7
Periaquaductal grey, lateral
nTPM: 43.7
2053 Male, age 18, unknown 48.3
2140 Male, age 76, both hemispheres 42.8
2272 Male, age 74, both hemispheres 40.1
Pretectal area
nTPM: 52.3
2007 Male, age 72, unknown 61.1
1817 Female, age 42, unknown 60.1
1815 Male, age 53, unknown 58.6
2407 Male, age 75, both hemispheres 56.7
1944 Female, age 72, unknown 53.8
1816 Male, age 51, unknown 53.0
2825 Male, age 18, unknown 52.9
2667 Female, age 75, unknown 51.0
2316 Male, age 76, right hemisphere 44.7
2224 Female, age 72, unknown 42.6
2273 Male, age 74, both hemispheres 40.5
Red nucleus
nTPM: 62.6
2584 Male, age 75, left hemisphere 73.7
1865 Male, age 51, unknown 69.2
1904 Male, age 53, unknown 67.2
2588 Male, age 74, left hemisphere 63.0
2227 Male, age 72, unknown 61.8
2503 Female, age 72, unknown 61.5
2769 Male, age 72, unknown 60.4
2785 Male, age 18, unknown 60.2
2725 Female, age 75, unknown 59.4
2823 Male, age 76, right hemisphere 59.1
1954 Female, age 42, unknown 59.0
1821 Female, age 72, unknown 56.8
Substantia nigra
nTPM: 55.8
2583 Male, age 75, right hemisphere 68.1
1851 Male, age 51, unknown 60.7
1916 Female, age 42, unknown 60.7
1889 Female, age 72, unknown 60.2
2665 Male, age 74, both hemispheres 55.5
2699 Male, age 18, unknown 54.4
2409 Female, age 72, unknown 52.5
1941 Male, age 53, unknown 50.6
2590 Female, age 75, unknown 49.7
2241 Male, age 72, unknown 45.9
Superior colliculus
nTPM: 57.2
2664 Male, age 75, both hemispheres 70.4
1913 Female, age 42, unknown 64.6
1995 Male, age 72, unknown 64.1
2668 Female, age 75, unknown 63.7
2261 Male, age 18, unknown 54.4
2587 Male, age 74, left hemisphere 53.7
1796 Male, age 53, unknown 53.6
1895 Male, age 76, right hemisphere 49.5
2087 Female, age 72, unknown 49.5
1839 Male, age 51, unknown 48.3
Ventral tegmental area
nTPM: 56.2
2223 Female, age 72, unknown 63.1
2410 Female, age 72, unknown 58.9
1915 Female, age 42, unknown 57.3
2218 Male, age 76, both hemispheres 53.9
1942 Male, age 51, unknown 53.4
2021 Male, age 53, unknown 50.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 69.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.9
Samples: 139

Max nTPM: 170.0
Min nTPM: 33.3
Std nTPM: 18.6
Median nTPM: 67.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 170.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 145.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 122.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 122.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 105.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 102.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 101.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 99.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 99.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 97.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 93.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.7
FF:10158-103A5 76 years, female 68.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.3
Samples: 4

Max nTPM: 56.2
Min nTPM: 40.6
Sample A Female 56.2
Sample B Female 40.6
Sample C Male 51.1
Sample D Male 45.4
Midbrain
nTPM: 56.8
Samples: 4

Max nTPM: 73.3
Min nTPM: 44.3
Sample A Female 73.3
Sample B Female 44.3
Sample C Male 60.6
Sample D Male 48.8
Periaqueductal gray
nTPM: 41.3
Samples: 3

Max nTPM: 44.5
Min nTPM: 39.5
Sample B Female 39.5
Sample C Male 44.5
Sample D Male 40.0
Superior colliculi
nTPM: 56.2
Samples: 4

Max nTPM: 61.7
Min nTPM: 49.1
Sample A Female 58.6
Sample B Female 49.1
Sample C Male 61.7
Sample D Male 55.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 72.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.3
Samples: 4

Max nTPM: 80.7
Min nTPM: 66.1
Sample A Male 80.7
Sample B Male 67.8
Sample C Female 66.1
Sample D Female 74.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68076557 Antisense, RP_040923_02_G06, Mouse strain C57BL/6J (56 days, male) 0.5

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