MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:207.2 nTPM
HPA Brain:171.3 nTPM
GTEx:207.2 nTPM
FANTOM5:173.2 Scaled Tags Per Million
Pig:110.7 nTPM
Mouse:2.5 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 171.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 164.0
2586 Male, age 75, left hemisphere 250.1
2019 Male, age 18, unknown 177.9
2666 Male, age 74, left hemisphere 177.7
2828 Female, age 72, unknown 176.3
1827 Male, age 72, unknown 153.9
1830 Male, age 51, unknown 148.0
1870 Female, age 42, unknown 146.6
1833 Male, age 53, unknown 141.9
2219 Male, age 76, both hemispheres 137.7
2411 Female, age 72, unknown 129.7
Dorsal raphe nucleus
nTPM: 145.2
2016 Female, age 72, unknown 159.7
1828 Male, age 53, unknown 155.7
2047 Male, age 72, unknown 138.8
2750 Male, age 76, both hemispheres 135.9
2298 Female, age 72, unknown 135.8
Inferior colliculus
nTPM: 150.7
1890 Male, age 53, unknown 157.2
1848 Female, age 42, unknown 149.8
2849 Male, age 72, unknown 148.6
2097 Female, age 72, unknown 147.2
Median raphe nucleus
nTPM: 121.0
2220 Male, age 76, midline 121.0
Periaquaductal grey, anterior
nTPM: 158.7
2502 Female, age 75, unknown 169.2
1795 Male, age 51, unknown 156.7
1947 Male, age 18, unknown 150.3
Periaquaductal grey, dorsal
nTPM: 134.7
1831 Male, age 72, unknown 154.8
1840 Male, age 53, unknown 132.1
2850 Male, age 76, both hemispheres 127.4
2464 Female, age 72, unknown 124.7
Periaquaductal grey, lateral
nTPM: 132.9
2272 Male, age 74, both hemispheres 137.4
2053 Male, age 18, unknown 136.0
2140 Male, age 76, both hemispheres 125.4
Pretectal area
nTPM: 156.5
2407 Male, age 75, both hemispheres 192.4
1817 Female, age 42, unknown 176.0
1815 Male, age 53, unknown 171.5
1816 Male, age 51, unknown 167.4
2007 Male, age 72, unknown 164.3
1944 Female, age 72, unknown 160.7
2667 Female, age 75, unknown 155.2
2825 Male, age 18, unknown 141.5
2273 Male, age 74, both hemispheres 134.6
2316 Male, age 76, right hemisphere 129.6
2224 Female, age 72, unknown 127.8
Red nucleus
nTPM: 171.3
2584 Male, age 75, left hemisphere 201.3
2503 Female, age 72, unknown 182.2
2227 Male, age 72, unknown 181.6
2769 Male, age 72, unknown 180.8
1821 Female, age 72, unknown 174.2
2588 Male, age 74, left hemisphere 170.8
1865 Male, age 51, unknown 170.1
1904 Male, age 53, unknown 170.0
2785 Male, age 18, unknown 169.0
1954 Female, age 42, unknown 161.7
2725 Female, age 75, unknown 158.7
2823 Male, age 76, right hemisphere 135.5
Substantia nigra
nTPM: 168.2
2665 Male, age 74, both hemispheres 192.8
2699 Male, age 18, unknown 192.6
2583 Male, age 75, right hemisphere 189.3
1851 Male, age 51, unknown 178.1
1889 Female, age 72, unknown 172.5
1916 Female, age 42, unknown 171.8
2590 Female, age 75, unknown 163.3
1941 Male, age 53, unknown 155.7
2409 Female, age 72, unknown 144.5
2241 Male, age 72, unknown 121.0
Superior colliculus
nTPM: 164.1
2664 Male, age 75, both hemispheres 220.9
1995 Male, age 72, unknown 180.1
1913 Female, age 42, unknown 170.6
2668 Female, age 75, unknown 167.1
1796 Male, age 53, unknown 164.6
2087 Female, age 72, unknown 162.2
2587 Male, age 74, left hemisphere 147.2
2261 Male, age 18, unknown 145.3
1839 Male, age 51, unknown 145.0
1895 Male, age 76, right hemisphere 137.7
Ventral tegmental area
nTPM: 154.3
1942 Male, age 51, unknown 165.6
1915 Female, age 42, unknown 160.5
2223 Female, age 72, unknown 158.1
2021 Male, age 53, unknown 152.3
2410 Female, age 72, unknown 150.1
2218 Male, age 76, both hemispheres 139.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 207.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 207.2
Samples: 139

Max nTPM: 321.0
Min nTPM: 114.1
Std nTPM: 42.6
Median nTPM: 207.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 321.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 315.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 296.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 290.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 289.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 287.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 286.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 283.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 283.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 282.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 280.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 173.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 173.2
FF:10158-103A5 76 years, female 173.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 110.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 109.7
Samples: 4

Max nTPM: 116.3
Min nTPM: 95.4
Sample A Female 111.0
Sample B Female 95.4
Sample C Male 116.2
Sample D Male 116.3
Midbrain
nTPM: 109.9
Samples: 4

Max nTPM: 142.8
Min nTPM: 96.8
Sample A Female 142.8
Sample B Female 102.6
Sample C Male 96.8
Sample D Male 97.3
Periaqueductal gray
nTPM: 84.8
Samples: 3

Max nTPM: 90.5
Min nTPM: 75.6
Sample B Female 88.3
Sample C Male 90.5
Sample D Male 75.6
Superior colliculi
nTPM: 110.7
Samples: 4

Max nTPM: 124.6
Min nTPM: 92.2
Sample A Female 124.6
Sample B Female 92.2
Sample C Male 108.2
Sample D Male 117.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.5
Samples: 4

Max nTPM: 5.2
Min nTPM: 0.8
Sample A Male 5.2
Sample B Male 1.4
Sample C Female 0.8
Sample D Female 2.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
79544866 Antisense, RP_071101_01_A12, Mouse strain C57BL/6J (56 days, male) 4.4

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