MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:611.7 nTPM
HPA Brain:904.4 nTPM
GTEx:611.7 nTPM
FANTOM5:1383.6 Scaled Tags Per Million
Pig:1335.1 nTPM
Mouse:1799.5 nTPM
Allen mouse:21.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 904.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 708.0
2219 Male, age 76, both hemispheres 1116.5
2019 Male, age 18, unknown 884.1
2411 Female, age 72, unknown 815.6
1827 Male, age 72, unknown 714.2
1870 Female, age 42, unknown 648.9
1833 Male, age 53, unknown 634.1
2828 Female, age 72, unknown 605.4
1830 Male, age 51, unknown 595.3
2666 Male, age 74, left hemisphere 560.7
2586 Male, age 75, left hemisphere 505.1
Dorsal raphe nucleus
nTPM: 796.0
2298 Female, age 72, unknown 1009.7
2047 Male, age 72, unknown 857.1
1828 Male, age 53, unknown 793.9
2750 Male, age 76, both hemispheres 669.5
2016 Female, age 72, unknown 649.8
Inferior colliculus
nTPM: 665.1
2097 Female, age 72, unknown 746.2
1890 Male, age 53, unknown 655.5
1848 Female, age 42, unknown 654.8
2849 Male, age 72, unknown 604.1
Median raphe nucleus
nTPM: 780.9
2220 Male, age 76, midline 780.9
Periaquaductal grey, anterior
nTPM: 673.3
1947 Male, age 18, unknown 703.6
1795 Male, age 51, unknown 677.0
2502 Female, age 75, unknown 639.3
Periaquaductal grey, dorsal
nTPM: 630.7
1840 Male, age 53, unknown 679.8
2850 Male, age 76, both hemispheres 640.8
1831 Male, age 72, unknown 601.7
2464 Female, age 72, unknown 600.4
Periaquaductal grey, lateral
nTPM: 616.6
2272 Male, age 74, both hemispheres 744.7
2140 Male, age 76, both hemispheres 553.1
2053 Male, age 18, unknown 552.1
Pretectal area
nTPM: 782.0
1944 Female, age 72, unknown 949.7
1817 Female, age 42, unknown 946.3
2007 Male, age 72, unknown 930.0
1816 Male, age 51, unknown 884.4
2667 Female, age 75, unknown 825.5
2273 Male, age 74, both hemispheres 797.4
1815 Male, age 53, unknown 787.6
2224 Female, age 72, unknown 784.9
2407 Male, age 75, both hemispheres 676.6
2825 Male, age 18, unknown 579.1
2316 Male, age 76, right hemisphere 440.1
Red nucleus
nTPM: 644.4
1821 Female, age 72, unknown 818.6
2785 Male, age 18, unknown 768.3
1865 Male, age 51, unknown 686.1
1954 Female, age 42, unknown 684.4
2725 Female, age 75, unknown 670.6
1904 Male, age 53, unknown 643.8
2503 Female, age 72, unknown 637.1
2769 Male, age 72, unknown 595.4
2227 Male, age 72, unknown 588.0
2588 Male, age 74, left hemisphere 563.9
2584 Male, age 75, left hemisphere 560.3
2823 Male, age 76, right hemisphere 516.9
Substantia nigra
nTPM: 904.4
1916 Female, age 42, unknown 1236.6
2241 Male, age 72, unknown 1089.4
1851 Male, age 51, unknown 1002.4
1941 Male, age 53, unknown 999.2
1889 Female, age 72, unknown 939.4
2409 Female, age 72, unknown 932.2
2699 Male, age 18, unknown 736.8
2590 Female, age 75, unknown 725.4
2665 Male, age 74, both hemispheres 715.1
2583 Male, age 75, right hemisphere 667.5
Superior colliculus
nTPM: 640.6
2087 Female, age 72, unknown 782.7
2587 Male, age 74, left hemisphere 724.4
2668 Female, age 75, unknown 720.4
1796 Male, age 53, unknown 694.5
2261 Male, age 18, unknown 690.9
1895 Male, age 76, right hemisphere 586.5
1839 Male, age 51, unknown 585.1
1913 Female, age 42, unknown 569.1
2664 Male, age 75, both hemispheres 548.9
1995 Male, age 72, unknown 503.1
Ventral tegmental area
nTPM: 802.8
2410 Female, age 72, unknown 1043.0
2218 Male, age 76, both hemispheres 871.1
1915 Female, age 42, unknown 867.9
2223 Female, age 72, unknown 709.5
1942 Male, age 51, unknown 702.7
2021 Male, age 53, unknown 622.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 611.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 611.7
Samples: 139

Max nTPM: 1684.0
Min nTPM: 236.3
Std nTPM: 270.2
Median nTPM: 539.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1684.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1479.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1467.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1450.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1357.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 1200.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1161.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1129.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1107.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1099.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1072.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1383.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1383.6
FF:10158-103A5 76 years, female 1383.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 1335.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1214.9
Samples: 4

Max nTPM: 1743.9
Min nTPM: 854.6
Sample A Female 1743.9
Sample B Female 979.7
Sample C Male 1281.4
Sample D Male 854.6
Midbrain
nTPM: 1266.7
Samples: 4

Max nTPM: 1586.7
Min nTPM: 1070.9
Sample A Female 1265.5
Sample B Female 1070.9
Sample C Male 1586.7
Sample D Male 1143.5
Periaqueductal gray
nTPM: 982.9
Samples: 3

Max nTPM: 1084.2
Min nTPM: 917.0
Sample B Female 917.0
Sample C Male 1084.2
Sample D Male 947.5
Superior colliculi
nTPM: 1335.1
Samples: 4

Max nTPM: 1746.0
Min nTPM: 959.5
Sample A Female 1382.6
Sample B Female 959.5
Sample C Male 1746.0
Sample D Male 1252.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1799.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 1799.5
Samples: 4

Max nTPM: 1855.4
Min nTPM: 1684.4
Sample A Male 1684.4
Sample B Male 1855.4
Sample C Female 1837.6
Sample D Female 1820.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.2
75694450 Antisense, RP_060518_03_G08, Mouse strain C57BL/6J (56 days, male) 21.2

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