MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.5 nTPM
HPA Brain:55.9 nTPM
GTEx:50.5 nTPM
FANTOM5:192.4 Scaled Tags Per Million
Pig:31.7 nTPM
Mouse:117.1 nTPM
Allen mouse:10.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.2
2411 Female, age 72, unknown 61.6
1870 Female, age 42, unknown 57.1
1827 Male, age 72, unknown 54.2
2019 Male, age 18, unknown 53.0
1833 Male, age 53, unknown 47.0
2219 Male, age 76, both hemispheres 45.9
1830 Male, age 51, unknown 45.5
2828 Female, age 72, unknown 42.2
2586 Male, age 75, left hemisphere 38.4
2666 Male, age 74, left hemisphere 37.4
Dorsal raphe nucleus
nTPM: 54.0
2298 Female, age 72, unknown 67.4
2750 Male, age 76, both hemispheres 58.0
2047 Male, age 72, unknown 51.7
1828 Male, age 53, unknown 47.3
2016 Female, age 72, unknown 45.7
Inferior colliculus
nTPM: 49.9
2097 Female, age 72, unknown 59.6
1890 Male, age 53, unknown 48.9
1848 Female, age 42, unknown 48.3
2849 Male, age 72, unknown 42.8
Median raphe nucleus
nTPM: 55.9
2220 Male, age 76, midline 55.9
Periaquaductal grey, anterior
nTPM: 50.6
2502 Female, age 75, unknown 54.1
1947 Male, age 18, unknown 52.2
1795 Male, age 51, unknown 45.5
Periaquaductal grey, dorsal
nTPM: 45.5
1840 Male, age 53, unknown 50.0
2850 Male, age 76, both hemispheres 45.4
2464 Female, age 72, unknown 44.9
1831 Male, age 72, unknown 42.0
Periaquaductal grey, lateral
nTPM: 46.7
2272 Male, age 74, both hemispheres 50.1
2053 Male, age 18, unknown 46.1
2140 Male, age 76, both hemispheres 43.9
Pretectal area
nTPM: 51.3
2007 Male, age 72, unknown 58.6
2224 Female, age 72, unknown 55.7
1816 Male, age 51, unknown 55.4
1817 Female, age 42, unknown 55.4
2273 Male, age 74, both hemispheres 54.7
1815 Male, age 53, unknown 52.7
1944 Female, age 72, unknown 51.3
2667 Female, age 75, unknown 49.6
2825 Male, age 18, unknown 46.5
2316 Male, age 76, right hemisphere 44.4
2407 Male, age 75, both hemispheres 40.5
Red nucleus
nTPM: 47.0
1821 Female, age 72, unknown 56.3
1865 Male, age 51, unknown 53.0
2725 Female, age 75, unknown 51.4
2785 Male, age 18, unknown 50.1
1954 Female, age 42, unknown 48.8
2503 Female, age 72, unknown 48.1
1904 Male, age 53, unknown 47.8
2769 Male, age 72, unknown 45.4
2227 Male, age 72, unknown 44.9
2823 Male, age 76, right hemisphere 42.8
2588 Male, age 74, left hemisphere 37.9
2584 Male, age 75, left hemisphere 37.8
Substantia nigra
nTPM: 52.1
2241 Male, age 72, unknown 62.9
1916 Female, age 42, unknown 60.7
1889 Female, age 72, unknown 59.8
1851 Male, age 51, unknown 57.7
2409 Female, age 72, unknown 54.8
1941 Male, age 53, unknown 50.7
2590 Female, age 75, unknown 45.3
2583 Male, age 75, right hemisphere 44.0
2665 Male, age 74, both hemispheres 43.8
2699 Male, age 18, unknown 40.8
Superior colliculus
nTPM: 48.2
2587 Male, age 74, left hemisphere 56.0
2261 Male, age 18, unknown 54.3
1796 Male, age 53, unknown 52.0
1895 Male, age 76, right hemisphere 51.8
1913 Female, age 42, unknown 49.3
2087 Female, age 72, unknown 48.8
2668 Female, age 75, unknown 47.5
1839 Male, age 51, unknown 45.9
1995 Male, age 72, unknown 41.4
2664 Male, age 75, both hemispheres 35.1
Ventral tegmental area
nTPM: 53.1
2410 Female, age 72, unknown 60.6
2223 Female, age 72, unknown 56.2
1915 Female, age 42, unknown 54.5
2218 Male, age 76, both hemispheres 51.5
2021 Male, age 53, unknown 49.3
1942 Male, age 51, unknown 46.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.5
Samples: 139

Max nTPM: 143.8
Min nTPM: 24.6
Std nTPM: 17.5
Median nTPM: 45.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 143.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 127.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 122.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 102.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 98.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 89.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 84.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 75.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 74.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 71.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 69.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 192.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 192.4
FF:10158-103A5 76 years, female 192.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.5
Samples: 4

Max nTPM: 38.7
Min nTPM: 24.3
Sample A Female 38.7
Sample B Female 28.0
Sample C Male 34.8
Sample D Male 24.3
Midbrain
nTPM: 31.7
Samples: 4

Max nTPM: 33.7
Min nTPM: 29.0
Sample A Female 29.0
Sample B Female 31.3
Sample C Male 33.7
Sample D Male 32.6
Periaqueductal gray
nTPM: 30.1
Samples: 3

Max nTPM: 32.3
Min nTPM: 27.9
Sample B Female 27.9
Sample C Male 32.3
Sample D Male 30.0
Superior colliculi
nTPM: 30.4
Samples: 4

Max nTPM: 32.5
Min nTPM: 27.1
Sample A Female 32.0
Sample B Female 27.1
Sample C Male 32.5
Sample D Male 29.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 117.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 117.1
Samples: 4

Max nTPM: 120.0
Min nTPM: 114.4
Sample A Male 119.0
Sample B Male 120.0
Sample C Female 114.4
Sample D Female 114.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
71380971 Antisense, RP_050426_02_A01, Mouse strain C57BL/6J (56 days, male) 10.7

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