MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.6 nTPM
HPA Brain:32.5 nTPM
GTEx:20.6 nTPM
FANTOM5:86.9 Scaled Tags Per Million
Pig:66.1 nTPM
Mouse:74.9 nTPM
Allen mouse:9.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.1
1870 Female, age 42, unknown 36.7
1833 Male, age 53, unknown 33.0
2411 Female, age 72, unknown 32.5
1830 Male, age 51, unknown 31.2
2586 Male, age 75, left hemisphere 29.7
1827 Male, age 72, unknown 29.2
2666 Male, age 74, left hemisphere 28.1
2019 Male, age 18, unknown 27.5
2828 Female, age 72, unknown 26.6
2219 Male, age 76, both hemispheres 26.3
Dorsal raphe nucleus
nTPM: 29.9
2750 Male, age 76, both hemispheres 33.5
1828 Male, age 53, unknown 30.4
2047 Male, age 72, unknown 30.3
2298 Female, age 72, unknown 29.3
2016 Female, age 72, unknown 25.7
Inferior colliculus
nTPM: 28.8
1848 Female, age 42, unknown 29.8
2849 Male, age 72, unknown 29.8
2097 Female, age 72, unknown 29.2
1890 Male, age 53, unknown 26.4
Median raphe nucleus
nTPM: 32.5
2220 Male, age 76, midline 32.5
Periaquaductal grey, anterior
nTPM: 30.0
1947 Male, age 18, unknown 33.8
2502 Female, age 75, unknown 28.7
1795 Male, age 51, unknown 27.4
Periaquaductal grey, dorsal
nTPM: 27.0
2464 Female, age 72, unknown 28.0
2850 Male, age 76, both hemispheres 27.1
1831 Male, age 72, unknown 26.7
1840 Male, age 53, unknown 26.1
Periaquaductal grey, lateral
nTPM: 25.9
2053 Male, age 18, unknown 27.9
2272 Male, age 74, both hemispheres 25.4
2140 Male, age 76, both hemispheres 24.4
Pretectal area
nTPM: 29.3
2224 Female, age 72, unknown 32.3
1817 Female, age 42, unknown 32.0
2825 Male, age 18, unknown 31.1
2007 Male, age 72, unknown 29.7
2667 Female, age 75, unknown 29.2
2316 Male, age 76, right hemisphere 29.0
1815 Male, age 53, unknown 28.4
1816 Male, age 51, unknown 28.2
1944 Female, age 72, unknown 27.8
2273 Male, age 74, both hemispheres 27.6
2407 Male, age 75, both hemispheres 26.5
Red nucleus
nTPM: 31.2
1821 Female, age 72, unknown 39.9
1954 Female, age 42, unknown 34.3
1904 Male, age 53, unknown 33.6
1865 Male, age 51, unknown 32.6
2227 Male, age 72, unknown 32.1
2503 Female, age 72, unknown 30.7
2769 Male, age 72, unknown 30.7
2725 Female, age 75, unknown 30.2
2785 Male, age 18, unknown 29.3
2823 Male, age 76, right hemisphere 27.6
2584 Male, age 75, left hemisphere 26.7
2588 Male, age 74, left hemisphere 26.4
Substantia nigra
nTPM: 29.2
1889 Female, age 72, unknown 32.1
2409 Female, age 72, unknown 31.3
2590 Female, age 75, unknown 30.6
1851 Male, age 51, unknown 30.1
2583 Male, age 75, right hemisphere 30.0
1916 Female, age 42, unknown 29.9
1941 Male, age 53, unknown 28.8
2241 Male, age 72, unknown 27.4
2699 Male, age 18, unknown 26.3
2665 Male, age 74, both hemispheres 25.6
Superior colliculus
nTPM: 29.2
1839 Male, age 51, unknown 32.0
2587 Male, age 74, left hemisphere 31.8
1895 Male, age 76, right hemisphere 30.8
1796 Male, age 53, unknown 29.7
2668 Female, age 75, unknown 29.6
1913 Female, age 42, unknown 29.1
1995 Male, age 72, unknown 29.1
2261 Male, age 18, unknown 28.6
2664 Male, age 75, both hemispheres 25.8
2087 Female, age 72, unknown 25.5
Ventral tegmental area
nTPM: 30.1
2410 Female, age 72, unknown 34.0
2223 Female, age 72, unknown 31.6
2218 Male, age 76, both hemispheres 30.5
1915 Female, age 42, unknown 29.1
2021 Male, age 53, unknown 28.2
1942 Male, age 51, unknown 27.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.6
Samples: 139

Max nTPM: 30.2
Min nTPM: 13.8
Std nTPM: 2.7
Median nTPM: 20.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 30.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 27.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 27.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 26.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 25.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 25.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 25.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 25.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 24.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 24.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 24.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.9
FF:10158-103A5 76 years, female 86.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.2
Samples: 4

Max nTPM: 65.7
Min nTPM: 51.7
Sample A Female 65.7
Sample B Female 51.7
Sample C Male 62.9
Sample D Male 56.5
Midbrain
nTPM: 66.1
Samples: 4

Max nTPM: 89.0
Min nTPM: 51.4
Sample A Female 89.0
Sample B Female 51.4
Sample C Male 66.4
Sample D Male 57.7
Periaqueductal gray
nTPM: 49.0
Samples: 3

Max nTPM: 52.8
Min nTPM: 46.1
Sample B Female 46.1
Sample C Male 52.8
Sample D Male 48.0
Superior colliculi
nTPM: 63.5
Samples: 4

Max nTPM: 70.5
Min nTPM: 52.9
Sample A Female 70.5
Sample B Female 52.9
Sample C Male 67.6
Sample D Male 62.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 74.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.9
Samples: 4

Max nTPM: 77.0
Min nTPM: 73.2
Sample A Male 77.0
Sample B Male 74.5
Sample C Female 74.8
Sample D Female 73.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.5
69015823 Antisense, RP_050315_01_G06, Mouse strain C57BL/6J (56 days, male) 9.5

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