MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:704.6 nTPM
HPA Brain:460.3 nTPM
GTEx:704.6 nTPM
FANTOM5:340.6 Scaled Tags Per Million
Pig:922.2 nTPM
Mouse:986.6 nTPM
Allen mouse:8.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 460.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 336.1
1827 Male, age 72, unknown 484.8
2411 Female, age 72, unknown 426.7
1870 Female, age 42, unknown 416.6
2828 Female, age 72, unknown 409.7
1833 Male, age 53, unknown 314.7
2219 Male, age 76, both hemispheres 313.8
1830 Male, age 51, unknown 313.1
2666 Male, age 74, left hemisphere 282.0
2019 Male, age 18, unknown 248.1
2586 Male, age 75, left hemisphere 151.5
Dorsal raphe nucleus
nTPM: 301.4
2750 Male, age 76, both hemispheres 531.7
2298 Female, age 72, unknown 275.8
2047 Male, age 72, unknown 254.2
1828 Male, age 53, unknown 234.0
2016 Female, age 72, unknown 211.4
Inferior colliculus
nTPM: 237.4
2097 Female, age 72, unknown 278.8
1848 Female, age 42, unknown 254.1
1890 Male, age 53, unknown 215.8
2849 Male, age 72, unknown 201.1
Median raphe nucleus
nTPM: 460.3
2220 Male, age 76, midline 460.3
Periaquaductal grey, anterior
nTPM: 363.5
1795 Male, age 51, unknown 401.2
1947 Male, age 18, unknown 396.3
2502 Female, age 75, unknown 293.0
Periaquaductal grey, dorsal
nTPM: 247.6
1831 Male, age 72, unknown 322.9
2850 Male, age 76, both hemispheres 232.3
2464 Female, age 72, unknown 221.2
1840 Male, age 53, unknown 214.2
Periaquaductal grey, lateral
nTPM: 297.3
2053 Male, age 18, unknown 382.6
2272 Male, age 74, both hemispheres 311.7
2140 Male, age 76, both hemispheres 197.6
Pretectal area
nTPM: 360.0
1816 Male, age 51, unknown 489.0
1944 Female, age 72, unknown 449.9
1815 Male, age 53, unknown 418.0
2667 Female, age 75, unknown 354.3
2273 Male, age 74, both hemispheres 335.7
2407 Male, age 75, both hemispheres 334.8
1817 Female, age 42, unknown 334.3
2825 Male, age 18, unknown 327.7
2007 Male, age 72, unknown 319.5
2224 Female, age 72, unknown 314.4
2316 Male, age 76, right hemisphere 282.2
Red nucleus
nTPM: 335.1
2823 Male, age 76, right hemisphere 394.3
2725 Female, age 75, unknown 372.9
2584 Male, age 75, left hemisphere 372.4
1821 Female, age 72, unknown 353.5
2503 Female, age 72, unknown 348.5
1904 Male, age 53, unknown 345.0
1954 Female, age 42, unknown 343.1
1865 Male, age 51, unknown 335.9
2588 Male, age 74, left hemisphere 333.0
2769 Male, age 72, unknown 283.8
2227 Male, age 72, unknown 281.8
2785 Male, age 18, unknown 257.6
Substantia nigra
nTPM: 324.4
1916 Female, age 42, unknown 390.0
1889 Female, age 72, unknown 371.9
2241 Male, age 72, unknown 369.7
1851 Male, age 51, unknown 348.7
1941 Male, age 53, unknown 338.8
2409 Female, age 72, unknown 327.2
2590 Female, age 75, unknown 327.1
2583 Male, age 75, right hemisphere 310.1
2699 Male, age 18, unknown 285.8
2665 Male, age 74, both hemispheres 175.1
Superior colliculus
nTPM: 351.5
2261 Male, age 18, unknown 459.8
1913 Female, age 42, unknown 452.8
2587 Male, age 74, left hemisphere 442.5
1796 Male, age 53, unknown 425.0
2087 Female, age 72, unknown 411.1
2668 Female, age 75, unknown 358.1
1995 Male, age 72, unknown 290.5
1895 Male, age 76, right hemisphere 269.3
1839 Male, age 51, unknown 239.8
2664 Male, age 75, both hemispheres 166.3
Ventral tegmental area
nTPM: 383.0
2223 Female, age 72, unknown 442.6
2218 Male, age 76, both hemispheres 420.1
2410 Female, age 72, unknown 395.5
1915 Female, age 42, unknown 363.5
2021 Male, age 53, unknown 355.5
1942 Male, age 51, unknown 321.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 704.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 704.6
Samples: 139

Max nTPM: 1491.7
Min nTPM: 200.2
Std nTPM: 255.9
Median nTPM: 690.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1491.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1425.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1367.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1353.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1341.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 1302.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1243.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1234.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1195.1
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 1154.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 1144.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 340.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 340.6
FF:10158-103A5 76 years, female 340.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 922.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 768.2
Samples: 4

Max nTPM: 930.1
Min nTPM: 562.2
Sample A Female 930.1
Sample B Female 562.2
Sample C Male 768.7
Sample D Male 811.7
Midbrain
nTPM: 922.1
Samples: 4

Max nTPM: 1466.0
Min nTPM: 595.5
Sample A Female 1466.0
Sample B Female 842.6
Sample C Male 784.4
Sample D Male 595.5
Periaqueductal gray
nTPM: 607.0
Samples: 3

Max nTPM: 671.1
Min nTPM: 571.2
Sample B Female 671.1
Sample C Male 578.8
Sample D Male 571.2
Superior colliculi
nTPM: 650.6
Samples: 4

Max nTPM: 766.8
Min nTPM: 432.2
Sample A Female 766.8
Sample B Female 432.2
Sample C Male 684.2
Sample D Male 719.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 986.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 986.6
Samples: 4

Max nTPM: 1013.9
Min nTPM: 945.6
Sample A Male 999.6
Sample B Male 945.6
Sample C Female 987.4
Sample D Female 1013.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.7
71016595 Antisense, RP_050725_03_A05, Mouse strain C57BL/6J (56 days, male) 9.9
68632984 Antisense, RP_050125_02_B12, Mouse strain C57BL/6J (56 days, male) 7.5

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