BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:88.8 nTPM
HPA Brain:89.2 nTPM
GTEx:88.8 nTPM
FANTOM5:131.1 Scaled Tags Per Million
Pig:45.5 nTPM
Mouse:23.5 nTPM
Allen mouse:2.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 89.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 59.1
1781 Male, age 74, unknown 100.1
2289 Male, age 61, right hemisphere 68.2
2481 Female, age 94, left hemisphere 65.2
2846 Female, age 79, unknown 61.6
1854 Male, age 80, left hemisphere 58.5
2288 Male, age 75, left hemisphere 46.6
2290 Female, age 72, unknown 40.7
1857 Female, age 85, left hemisphere 32.1
Globus pallidus, externus
nTPM: 89.2
2395 Male, age 75, both hemispheres 109.6
2772 Female, age 79, unknown 105.1
1996 Male, age 80, right hemisphere 103.8
2646 Male, age 61, right hemisphere 82.8
2567 Female, age 72, unknown 44.7
Globus pallidus, internus
nTPM: 81.9
2037 Male, age 80, right hemisphere 112.1
1818 Male, age 74, unknown 110.5
2778 Female, age 91, both hemispheres 87.4
2111 Female, age 85, right hemisphere 84.7
2483 Female, age 94, right hemisphere 63.7
2287 Male, age 75, right hemisphere 59.8
2566 Female, age 72, unknown 55.2
Nucleus accumbens
nTPM: 42.7
2732 Male, age 80, right hemisphere 83.1
2286 Male, age 75, left hemisphere 47.7
2391 Female, age 94, left hemisphere 46.4
1783 Male, age 74, unknown 42.2
2698 Female, age 72, unknown 35.5
1856 Female, age 91, right hemisphere 34.6
1806 Female, age 85, left hemisphere 33.6
2824 Male, age 61, right hemisphere 18.6
Nucleus basalis of Meynert
nTPM: 75.8
2569 Male, age 61, both hemispheres 101.5
2484 Female, age 94, left hemisphere 80.3
2821 Male, age 75, both hemispheres 71.7
2393 Male, age 80, right hemisphere 49.7
Nucleus of the diagonal band
nTPM: 60.1
1812 Female, age 91, both hemispheres 136.8
1979 Male, age 74, unknown 63.9
2775 Male, age 80, right hemisphere 40.5
2195 Female, age 85, both hemispheres 32.9
2029 Male, age 61, right hemisphere 26.2
Putamen
nTPM: 49.0
2647 Male, age 75, left hemisphere 66.2
2482 Female, age 94, left hemisphere 62.1
2466 Female, age 79, unknown 53.7
2489 Female, age 72, unknown 47.8
1937 Female, age 91, right hemisphere 40.2
1838 Male, age 80, right hemisphere 38.4
1829 Male, age 74, unknown 34.9
Septal nuclei
nTPM: 67.7
2009 Female, age 91, both hemispheres 139.1
2199 Male, age 80, right hemisphere 103.3
2629 Female, age 94, right hemisphere 55.8
2031 Female, age 72, unknown 54.5
2394 Male, age 61, left hemisphere 51.9
2059 Female, age 85, both hemispheres 40.4
1960 Male, age 74, unknown 28.7
Stria terminalis, bed nucleus
nTPM: 33.4
1974 Female, age 91, both hemispheres 38.5
2486 Female, age 94, both hemispheres 36.8
2201 Male, age 74, unknown 25.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 88.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 86.9
Samples: 246

Max nTPM: 492.2
Min nTPM: 11.0
Std nTPM: 69.1
Median nTPM: 67.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 492.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 443.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 414.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 332.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 303.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 272.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 260.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 249.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 245.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 239.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 234.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 61.6
Samples: 246

Max nTPM: 480.7
Min nTPM: 9.6
Std nTPM: 53.0
Median nTPM: 48.4
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 480.7
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 367.4
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 220.8
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 220.6
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 216.4
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 200.5
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 191.2
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 185.9
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 185.7
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 172.8
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 167.9
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Brain - Putamen (basal ganglia)
Average nTPM: 88.8
Samples: 205

Max nTPM: 513.5
Min nTPM: 10.1
Std nTPM: 71.6
Median nTPM: 67.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 513.5
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 373.0
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 342.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 294.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 280.8
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 268.9
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 263.9
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 261.1
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 257.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 246.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 240.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 131.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 99.1
FF:10164-103B2 76 years, female 99.1
Nucleus accumbens
Scaled Tags Per Million: 119.3
FF:10037-101F1 23-56 years, mixed 119.3
Putamen
Scaled Tags Per Million: 51.7
FF:10176-103C5 60 years, female 51.7
Globus pallidus
Scaled Tags Per Million: 131.1
FF:10161-103A8 76 years, female 152.3
FF:10175-103C4 60 years, female 109.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 45.5
Pig sample Sample description nTPM
Caudate
nTPM: 34.9
Samples: 4

Max nTPM: 52.9
Min nTPM: 22.3
Sample A Female 32.8
Sample B Female 22.3
Sample C Male 52.9
Sample D Male 31.7
Putamen
nTPM: 36.4
Samples: 4

Max nTPM: 60.4
Min nTPM: 19.4
Sample A Female 30.8
Sample B Female 19.4
Sample C Male 60.4
Sample D Male 35.1
Septum
nTPM: 45.5
Samples: 4

Max nTPM: 74.2
Min nTPM: 18.1
Sample A Female 74.2
Sample B Female 18.1
Sample C Male 63.1
Sample D Male 26.6
Ventral pallidum
nTPM: 33.2
Samples: 4

Max nTPM: 57.0
Min nTPM: 23.8
Sample A Female 24.9
Sample B Female 23.8
Sample C Male 57.0
Sample D Male 27.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 23.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 23.5
Samples: 4

Max nTPM: 30.5
Min nTPM: 16.1
Sample A Male 30.5
Sample B Male 25.0
Sample C Female 16.1
Sample D Female 22.4
Septum
nTPM: 14.1
Samples: 4

Max nTPM: 17.6
Min nTPM: 10.0
Sample A Male 15.6
Sample B Male 17.6
Sample C Female 10.0
Sample D Female 13.1
Ventral forebrain
nTPM: 20.9
Samples: 4

Max nTPM: 24.8
Min nTPM: 12.3
Sample A Male 22.9
Sample B Male 23.5
Sample C Female 12.3
Sample D Female 24.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.6
71608353 Antisense, RP_050927_01_E09, Mouse strain C57BL/6J (56 days, male) 4.1
324212 Antisense, RP_040617_01_E07, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 1.7
71608353 Antisense, RP_050927_01_E09, Mouse strain C57BL/6J (56 days, male) 3.0
324212 Antisense, RP_040617_01_E07, Mouse strain C57BL/6J (56 days, male) 0.4

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