MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:96.2 nTPM
HPA Brain:102.6 nTPM
GTEx:96.2 nTPM
FANTOM5:315.5 Scaled Tags Per Million
Pig:133.1 nTPM
Mouse:14.5 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 102.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.3
2019 Male, age 18, unknown 181.9
2219 Male, age 76, both hemispheres 115.7
2666 Male, age 74, left hemisphere 99.8
1827 Male, age 72, unknown 70.9
2411 Female, age 72, unknown 68.3
1833 Male, age 53, unknown 67.2
2828 Female, age 72, unknown 65.7
1870 Female, age 42, unknown 49.3
1830 Male, age 51, unknown 47.9
2586 Male, age 75, left hemisphere 46.7
Dorsal raphe nucleus
nTPM: 80.4
2298 Female, age 72, unknown 143.9
2016 Female, age 72, unknown 95.2
1828 Male, age 53, unknown 74.9
2750 Male, age 76, both hemispheres 50.3
2047 Male, age 72, unknown 37.9
Inferior colliculus
nTPM: 56.6
2097 Female, age 72, unknown 84.4
1890 Male, age 53, unknown 77.4
2849 Male, age 72, unknown 33.8
1848 Female, age 42, unknown 30.8
Median raphe nucleus
nTPM: 64.5
2220 Male, age 76, midline 64.5
Periaquaductal grey, anterior
nTPM: 102.6
1795 Male, age 51, unknown 182.7
2502 Female, age 75, unknown 78.9
1947 Male, age 18, unknown 46.2
Periaquaductal grey, dorsal
nTPM: 87.6
1831 Male, age 72, unknown 152.7
2850 Male, age 76, both hemispheres 83.4
2464 Female, age 72, unknown 67.1
1840 Male, age 53, unknown 47.3
Periaquaductal grey, lateral
nTPM: 100.6
2272 Male, age 74, both hemispheres 143.5
2140 Male, age 76, both hemispheres 96.5
2053 Male, age 18, unknown 61.7
Pretectal area
nTPM: 100.9
1817 Female, age 42, unknown 185.1
2007 Male, age 72, unknown 172.5
1816 Male, age 51, unknown 145.1
2224 Female, age 72, unknown 121.4
2273 Male, age 74, both hemispheres 119.2
1815 Male, age 53, unknown 86.8
1944 Female, age 72, unknown 74.9
2667 Female, age 75, unknown 66.1
2316 Male, age 76, right hemisphere 59.2
2407 Male, age 75, both hemispheres 44.1
2825 Male, age 18, unknown 35.2
Red nucleus
nTPM: 75.0
2785 Male, age 18, unknown 201.2
1904 Male, age 53, unknown 94.1
2588 Male, age 74, left hemisphere 83.4
1821 Female, age 72, unknown 72.5
2503 Female, age 72, unknown 68.5
2725 Female, age 75, unknown 62.4
2227 Male, age 72, unknown 60.2
2769 Male, age 72, unknown 59.6
2584 Male, age 75, left hemisphere 55.3
1865 Male, age 51, unknown 50.1
1954 Female, age 42, unknown 49.2
2823 Male, age 76, right hemisphere 42.9
Substantia nigra
nTPM: 59.0
2665 Male, age 74, both hemispheres 88.6
2590 Female, age 75, unknown 85.6
1889 Female, age 72, unknown 78.5
1851 Male, age 51, unknown 66.0
2583 Male, age 75, right hemisphere 65.9
1941 Male, age 53, unknown 54.6
2699 Male, age 18, unknown 41.5
1916 Female, age 42, unknown 38.2
2409 Female, age 72, unknown 38.1
2241 Male, age 72, unknown 33.0
Superior colliculus
nTPM: 73.7
1995 Male, age 72, unknown 120.3
1913 Female, age 42, unknown 97.2
2587 Male, age 74, left hemisphere 96.8
2261 Male, age 18, unknown 92.3
2668 Female, age 75, unknown 73.0
2087 Female, age 72, unknown 70.2
1796 Male, age 53, unknown 63.5
2664 Male, age 75, both hemispheres 47.0
1895 Male, age 76, right hemisphere 39.3
1839 Male, age 51, unknown 37.7
Ventral tegmental area
nTPM: 62.8
1915 Female, age 42, unknown 74.1
2223 Female, age 72, unknown 70.6
2021 Male, age 53, unknown 60.8
1942 Male, age 51, unknown 58.9
2410 Female, age 72, unknown 57.1
2218 Male, age 76, both hemispheres 55.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 96.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 96.2
Samples: 139

Max nTPM: 301.0
Min nTPM: 16.9
Std nTPM: 50.2
Median nTPM: 84.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 301.0
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 223.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 215.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 200.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 195.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 189.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 189.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 187.4
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 186.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 182.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 179.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 315.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 315.5
FF:10158-103A5 76 years, female 315.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 133.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 75.9
Samples: 4

Max nTPM: 101.6
Min nTPM: 60.5
Sample A Female 78.0
Sample B Female 101.6
Sample C Male 63.4
Sample D Male 60.5
Midbrain
nTPM: 61.5
Samples: 4

Max nTPM: 107.3
Min nTPM: 25.4
Sample A Female 72.4
Sample B Female 25.4
Sample C Male 107.3
Sample D Male 40.8
Periaqueductal gray
nTPM: 26.9
Samples: 3

Max nTPM: 41.2
Min nTPM: 18.0
Sample B Female 18.0
Sample C Male 41.2
Sample D Male 21.5
Superior colliculi
nTPM: 133.1
Samples: 4

Max nTPM: 222.3
Min nTPM: 70.3
Sample A Female 129.6
Sample B Female 222.3
Sample C Male 110.3
Sample D Male 70.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.5
Samples: 4

Max nTPM: 15.4
Min nTPM: 12.2
Sample A Male 15.4
Sample B Male 15.1
Sample C Female 12.2
Sample D Female 15.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
71608353 Antisense, RP_050927_01_E09, Mouse strain C57BL/6J (56 days, male) 3.1
324212 Antisense, RP_040617_01_E07, Mouse strain C57BL/6J (56 days, male) 1.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org