MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:120.1 nTPM
HPA Brain:82.3 nTPM
GTEx:120.1 nTPM
FANTOM5:68.5 Scaled Tags Per Million
Pig:116.1 nTPM
Mouse:137.4 nTPM
Allen mouse:10.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 82.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.2
2411 Female, age 72, unknown 70.6
2219 Male, age 76, both hemispheres 63.9
2019 Male, age 18, unknown 62.3
1827 Male, age 72, unknown 61.0
1870 Female, age 42, unknown 61.0
2586 Male, age 75, left hemisphere 60.9
1833 Male, age 53, unknown 54.4
1830 Male, age 51, unknown 45.4
2828 Female, age 72, unknown 43.2
2666 Male, age 74, left hemisphere 38.9
Dorsal raphe nucleus
nTPM: 70.7
2298 Female, age 72, unknown 90.0
1828 Male, age 53, unknown 75.7
2047 Male, age 72, unknown 73.1
2750 Male, age 76, both hemispheres 61.2
2016 Female, age 72, unknown 53.5
Inferior colliculus
nTPM: 68.4
2097 Female, age 72, unknown 93.8
1890 Male, age 53, unknown 72.7
1848 Female, age 42, unknown 56.3
2849 Male, age 72, unknown 50.9
Median raphe nucleus
nTPM: 77.6
2220 Male, age 76, midline 77.6
Periaquaductal grey, anterior
nTPM: 60.7
2502 Female, age 75, unknown 65.2
1947 Male, age 18, unknown 61.9
1795 Male, age 51, unknown 55.1
Periaquaductal grey, dorsal
nTPM: 57.5
1840 Male, age 53, unknown 62.3
2850 Male, age 76, both hemispheres 59.2
2464 Female, age 72, unknown 55.7
1831 Male, age 72, unknown 52.7
Periaquaductal grey, lateral
nTPM: 52.8
2272 Male, age 74, both hemispheres 60.4
2053 Male, age 18, unknown 53.3
2140 Male, age 76, both hemispheres 44.5
Pretectal area
nTPM: 67.3
1944 Female, age 72, unknown 91.4
1816 Male, age 51, unknown 84.3
1817 Female, age 42, unknown 78.5
2007 Male, age 72, unknown 72.4
2667 Female, age 75, unknown 72.1
2224 Female, age 72, unknown 71.0
1815 Male, age 53, unknown 67.4
2273 Male, age 74, both hemispheres 59.2
2825 Male, age 18, unknown 51.9
2407 Male, age 75, both hemispheres 47.0
2316 Male, age 76, right hemisphere 45.0
Red nucleus
nTPM: 53.2
1821 Female, age 72, unknown 73.3
2725 Female, age 75, unknown 64.4
2503 Female, age 72, unknown 58.7
1954 Female, age 42, unknown 58.2
2785 Male, age 18, unknown 52.7
1865 Male, age 51, unknown 51.6
2769 Male, age 72, unknown 51.4
1904 Male, age 53, unknown 51.3
2227 Male, age 72, unknown 50.2
2823 Male, age 76, right hemisphere 47.8
2584 Male, age 75, left hemisphere 40.8
2588 Male, age 74, left hemisphere 37.9
Substantia nigra
nTPM: 82.3
2241 Male, age 72, unknown 126.6
1916 Female, age 42, unknown 114.6
1889 Female, age 72, unknown 92.8
1851 Male, age 51, unknown 91.5
2409 Female, age 72, unknown 81.1
1941 Male, age 53, unknown 80.8
2699 Male, age 18, unknown 73.1
2665 Male, age 74, both hemispheres 67.1
2590 Female, age 75, unknown 50.9
2583 Male, age 75, right hemisphere 44.9
Superior colliculus
nTPM: 58.1
2087 Female, age 72, unknown 79.6
2261 Male, age 18, unknown 66.3
2587 Male, age 74, left hemisphere 63.3
2668 Female, age 75, unknown 61.0
1895 Male, age 76, right hemisphere 59.0
1839 Male, age 51, unknown 55.2
1796 Male, age 53, unknown 54.7
1913 Female, age 42, unknown 51.6
2664 Male, age 75, both hemispheres 48.3
1995 Male, age 72, unknown 42.0
Ventral tegmental area
nTPM: 72.7
2410 Female, age 72, unknown 84.5
1915 Female, age 42, unknown 79.7
2218 Male, age 76, both hemispheres 79.3
1942 Male, age 51, unknown 68.0
2223 Female, age 72, unknown 67.1
2021 Male, age 53, unknown 57.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 120.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 120.1
Samples: 139

Max nTPM: 290.9
Min nTPM: 39.3
Std nTPM: 44.0
Median nTPM: 112.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 290.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 271.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 267.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 249.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 210.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 207.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 194.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 190.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 190.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 190.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 189.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.5
FF:10158-103A5 76 years, female 68.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 116.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 103.8
Samples: 4

Max nTPM: 151.5
Min nTPM: 53.2
Sample A Female 122.1
Sample B Female 88.3
Sample C Male 151.5
Sample D Male 53.2
Midbrain
nTPM: 116.1
Samples: 4

Max nTPM: 176.6
Min nTPM: 48.0
Sample A Female 48.0
Sample B Female 97.4
Sample C Male 176.6
Sample D Male 142.5
Periaqueductal gray
nTPM: 89.8
Samples: 3

Max nTPM: 105.5
Min nTPM: 76.0
Sample B Female 76.0
Sample C Male 105.5
Sample D Male 87.8
Superior colliculi
nTPM: 108.4
Samples: 4

Max nTPM: 160.9
Min nTPM: 73.4
Sample A Female 91.4
Sample B Female 73.4
Sample C Male 160.9
Sample D Male 107.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 137.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 137.4
Samples: 4

Max nTPM: 155.3
Min nTPM: 119.4
Sample A Male 155.3
Sample B Male 145.0
Sample C Female 119.4
Sample D Female 129.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.5
68522460 Antisense, RP_050118_02_A12, Mouse strain C57BL/6J (56 days, male) 10.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org