HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:456.2 nTPM
HPA Brain:781.3 nTPM
GTEx:456.2 nTPM
FANTOM5:518.1 Scaled Tags Per Million
Pig:753.9 nTPM
Mouse:520.6 nTPM
Allen mouse:23.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 781.3
Sample id Sample description nTPM
Hippocampus
nTPM: 430.5
1898 Male, age 80, left hemisphere 666.6
2621 Female, age 67, right hemisphere 488.4
1911 Female, age 85, right hemisphere 434.5
1855 Male, age 76, left hemisphere 413.3
2148 Female, age 91, left hemisphere 342.1
2529 Female, age 94, left hemisphere 238.2
Dentate gyrus
nTPM: 441.6
1927 Female, age 91, both hemispheres 783.5
2010 Male, age 76, both hemispheres 479.0
2246 Female, age 85, both hemispheres 452.2
2530 Female, age 94, left hemisphere 370.5
2531 Female, age 67, both hemispheres 292.2
2528 Male, age 74, both hemispheres 272.3
Entorhinal gyrus
nTPM: 455.4
1938 Female, age 85, left hemisphere 607.9
2613 Female, age 94, left hemisphere 582.2
2764 Male, age 80, right hemisphere 548.3
1787 Male, age 76, left hemisphere 453.5
2686 Male, age 75, right hemisphere 321.2
2117 Female, age 91, right hemisphere 219.3
Hippocampus, CA1
nTPM: 605.6
2749 Male, age 80, left hemisphere 1328.9
1873 Female, age 85, both hemispheres 579.5
2527 Male, age 74, both hemispheres 409.4
2082 Female, age 91, right hemisphere 363.0
2045 Male, age 76, both hemispheres 347.0
Hippocampus, CA2
nTPM: 484.9
1892 Male, age 76, both hemispheres 718.1
1963 Male, age 80, left hemisphere 690.2
1940 Female, age 85, left hemisphere 469.5
2113 Female, age 91, right hemisphere 376.4
2249 Male, age 74, both hemispheres 344.8
2437 Female, age 94, left hemisphere 310.4
Hippocampus, CA3
nTPM: 511.3
2137 Male, age 80, left hemisphere 1102.6
1867 Male, age 76, both hemispheres 501.6
1891 Female, age 85, both hemispheres 390.0
2436 Male, age 74, both hemispheres 386.1
2620 Female, age 94, left hemisphere 380.5
2861 Female, age 67, both hemispheres 307.2
Parahippocampal cortex
nTPM: 540.1
1850 Male, age 80, both hemispheres 841.8
1990 Female, age 91, right hemisphere 621.9
2245 Female, age 91, both hemispheres 611.9
2693 Female, age 94, both hemispheres 608.5
1933 Female, age 85, both hemispheres 604.8
2532 Female, age 72, left hemisphere 491.0
2250 Female, age 67, right hemisphere 451.0
2622 Female, age 67, right hemisphere 436.2
2018 Male, age 76, both hemispheres 409.2
2692 Male, age 74, both hemispheres 324.7
Perirhinal gyrus
nTPM: 781.3
1847 Female, age 91, left hemisphere 1022.7
1841 Female, age 85, right hemisphere 853.5
1794 Male, age 80, right hemisphere 788.6
2521 Female, age 94, right hemisphere 710.7
2848 Male, age 76, right hemisphere 530.7
Subiculum
nTPM: 378.9
1901 Male, age 80, both hemispheres 637.6
1977 Female, age 85, both hemispheres 455.2
2042 Male, age 76, both hemispheres 363.6
2619 Male, age 74, both hemispheres 294.2
2438 Female, age 94, left hemisphere 273.6
2729 Female, age 91, right hemisphere 249.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 456.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 456.2
Samples: 197

Max nTPM: 1275.7
Min nTPM: 32.9
Std nTPM: 284.5
Median nTPM: 415.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 1275.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1275.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 1201.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 1066.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 1036.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 1033.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 1000.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 983.8
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 976.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 972.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 941.6
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 518.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 518.1
FF:10169-103B7 60 years, female 760.2
FF:10153-102I9 76 years, female 276.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 753.9
Pig sample Sample description nTPM
Subiculum
nTPM: 493.6
Samples: 4

Max nTPM: 635.4
Min nTPM: 416.1
Sample A Female 635.4
Sample B Female 447.6
Sample C Male 416.1
Sample D Male 475.2
Dorsal hippocampus
nTPM: 628.1
Samples: 4

Max nTPM: 735.0
Min nTPM: 495.8
Sample A Female 735.0
Sample B Female 659.5
Sample C Male 622.0
Sample D Male 495.8
Entorhinal cortex
nTPM: 753.9
Samples: 4

Max nTPM: 913.9
Min nTPM: 640.4
Sample A Female 795.0
Sample B Female 913.9
Sample C Male 666.4
Sample D Male 640.4
Ventral hippocampus
nTPM: 458.5
Samples: 4

Max nTPM: 700.6
Min nTPM: 337.9
Sample A Female 429.5
Sample B Female 365.8
Sample C Male 337.9
Sample D Male 700.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 520.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 386.9
Samples: 4

Max nTPM: 425.8
Min nTPM: 361.3
Sample A Male 375.6
Sample B Male 425.8
Sample C Female 384.9
Sample D Female 361.3
Hippocampal formation
nTPM: 520.6
Samples: 4

Max nTPM: 548.8
Min nTPM: 453.7
Sample A Male 543.4
Sample B Male 536.4
Sample C Female 548.8
Sample D Female 453.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 23.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 23.8
69838711 Antisense, RP_050317_04_F05, Mouse strain C57BL/6J (56 days, male) 25.3
73718053 Antisense, RP_051121_04_C07, Mouse strain C57BL/6J (56 days, male) 22.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org